BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0935900 Os01g0935900|AK069146
         (211 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0935900  Conserved hypothetical protein                      327   4e-90
Os05g0372000  Ribosomal protein L22/L17 family protein            200   6e-52

>Os01g0935900 Conserved hypothetical protein
          Length = 211

 Score =  327 bits (838), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 164/182 (90%), Positives = 164/182 (90%)

Query: 30  VQWLRTLSSLXXXXXXXXXXXXXXXXXXVGSPLGLSKIPGYEQTSRLSGTQVLPRWFSTG 89
           VQWLRTLSSL                  VGSPLGLSKIPGYEQTSRLSGTQVLPRWFSTG
Sbjct: 30  VQWLRTLSSLPRDPAAAASPAPAPRQPAVGSPLGLSKIPGYEQTSRLSGTQVLPRWFSTG 89

Query: 90  TSNGSSAQQEGATRKVMAFSPLEASIAKPRKGPLTSESWKVKQTELLTRSTYYMIPTLLL 149
           TSNGSSAQQEGATRKVMAFSPLEASIAKPRKGPLTSESWKVKQTELLTRSTYYMIPTLLL
Sbjct: 90  TSNGSSAQQEGATRKVMAFSPLEASIAKPRKGPLTSESWKVKQTELLTRSTYYMIPTLLL 149

Query: 150 VSKNSISTSLLVASVFHQVYMFYKEILLDYVHHDITRKWVFIYFKILLIIMAKETVVYFD 209
           VSKNSISTSLLVASVFHQVYMFYKEILLDYVHHDITRKWVFIYFKILLIIMAKETVVYFD
Sbjct: 150 VSKNSISTSLLVASVFHQVYMFYKEILLDYVHHDITRKWVFIYFKILLIIMAKETVVYFD 209

Query: 210 LF 211
           LF
Sbjct: 210 LF 211



>Os05g0372000 Ribosomal protein L22/L17 family protein
          Length = 200

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 120/171 (70%), Gaps = 20/171 (11%)

Query: 60  SPLGLSKIPGYEQTSRLSGTQVLPRWFSTGTSNGSSAQQ--------------------E 99
           SP GL K  GYE TS L G Q LP WFST  SNGS  Q+                    E
Sbjct: 29  SPPGLGKTLGYEPTSHLHGAQFLPCWFSTIASNGSHMQKAQETCKPVAGMEHSDALKVME 88

Query: 100 GATRKVMAFSPLEASIAKPRKGPLTSESWKVKQTELLTRSTYYMIPTLLLVSKNSISTSL 159
           G + KV+AFSPLEA+I KPR  PLT ES KVK++E+ T  T+YMIP+LL+ SKN ++TS+
Sbjct: 89  GTSPKVVAFSPLEAAITKPRSSPLTIESSKVKRSEIATLVTFYMIPSLLVSSKNGLATSI 148

Query: 160 LVASVFHQVYMFYKEILLDYVHHDITRKWVFIYFKILLIIMAKETVVYFDL 210
           LV +VFHQ+YMF+KEI LDYVHHDITRKW  IYFK+LL+IMAKET+VYF+ 
Sbjct: 149 LVGAVFHQIYMFHKEIFLDYVHHDITRKWALIYFKLLLLIMAKETIVYFNF 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,785,086
Number of extensions: 150995
Number of successful extensions: 342
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)