Os05g0372000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L22/L17 family protein.
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Os05g0372000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L22/L17 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.08 | 0.479 | 6.51 | -0.619 | 0.625 | -1.31 | 0.0093 | -1.78 | 0.00887 | 14.2 | 19.65 | 322 | -- | -- |
| 105.03 | 0.477 | 6.47 | -0.283 | 0.612 | -1.39 | -0.274 | -- | 0.0984 | 14.6 | 21.46 | 379 | -- | -- |
| 103.77 | 0.474 | 6.51 | -0.609 | 0.577 | -1.33 | -- | -1.75 | 0.0129 | 14.4 | 19.43 | 377 | -- | -- |
| 105.28 | 0.478 | 6.47 | -0.289 | 0.613 | -1.4 | -- | -- | 0.0987 | 14.6 | 21.5 | 379 | -- | -- |
| 110.01 | 0.489 | 6.52 | -0.601 | -- | -1.33 | -- | -1.84 | 0.00108 | -- | 17.42 | 807 | -- | -- |
| 141.39 | 0.557 | 6.52 | -0.59 | 0.447 | -- | -0.312 | -- | -0.14 | 10.6 | -- | -- | -- | -- |
| 141.78 | 0.558 | 6.52 | -0.604 | 0.45 | -- | -- | -- | -0.141 | 10.4 | -- | -- | -- | -- |
| 111.41 | 0.492 | 6.48 | -0.266 | -- | -1.23 | -- | -- | 0.0818 | -- | 21.5 | 850 | -- | -- |
| 107.33 | 0.483 | 6.47 | -- | 0.637 | -1.49 | -- | -- | 0.145 | 14.8 | 21.32 | 387 | -- | -- |
| 154.17 | 0.58 | 6.53 | -0.611 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 151.38 | 0.576 | 6.5 | -- | 0.454 | -- | -- | -- | -0.074 | 10.5 | -- | -- | -- | -- |
| 113.08 | 0.495 | 6.47 | -- | -- | -1.31 | -- | -- | 0.128 | -- | 21 | 855 | -- | -- |
| 164.02 | 0.598 | 6.51 | -- | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.89 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 102.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 4 | 102.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 23 | 103.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 24 | 103.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 31 | 104.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 32 | 104.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 51 | 104.61 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 83 | 104.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 89 | 104.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 101 | 105.08 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 120 | 105.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 13 |
| 147 | 105.40 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 159 | 105.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 187 | 105.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 220 | 105.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 294 | 105.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 295 | 105.94 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 299 | 105.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 337 | 106.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 386 | 106.17 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 404 | 106.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 449 | 106.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 512 | 106.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 529 | 106.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 558 | 106.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 587 | 106.53 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 622 | 106.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 828 | 106.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 848 | 106.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 864 | 106.95 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 937 | 107.04 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 23 |
| 963 | 107.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 982 | 107.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 4 |