BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0371200 Os05g0371200|AK109403
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0371200 Similar to 26S proteasome non-ATPase regulator... 573 e-164
Os01g0267200 Similar to 26S proteasome non-ATPase regulator... 570 e-163
Os06g0703600 Similar to 26S proteasome non-ATPase regulator... 398 e-111
Os07g0129600 154 7e-38
Os04g0654700 Similar to COP9 signalosome complex subunit 5b... 124 6e-29
>Os05g0371200 Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S
proteasome regulatory subunit rpn11)
Length = 307
Score = 573 bits (1476), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/307 (91%), Positives = 280/307 (91%)
Query: 1 MERLQRIFGASGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 60
MERLQRIFGASGMGQ EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
Sbjct: 1 MERLQRIFGASGMGQPPSDSPLLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 60
Query: 61 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL 120
DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL
Sbjct: 61 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL 120
Query: 121 SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG 180
SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG
Sbjct: 121 SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG 180
Query: 181 HLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLILKRFDTHSKTNE 240
HLNKPSIQALIHGLNRHYYSIAINYR WTDGLILKRFDTHSKTNE
Sbjct: 181 HLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKRFDTHSKTNE 240
Query: 241 QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT 300
QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT
Sbjct: 241 QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT 300
Query: 301 MLDTVVF 307
MLDTVVF
Sbjct: 301 MLDTVVF 307
>Os01g0267200 Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S
proteasome regulatory subunit rpn11)
Length = 307
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/307 (90%), Positives = 279/307 (90%)
Query: 1 MERLQRIFGASGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 60
MERLQRIFGASGMGQ EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
Sbjct: 1 MERLQRIFGASGMGQPPTDSPLLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 60
Query: 61 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL 120
DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL
Sbjct: 61 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWL 120
Query: 121 SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG 180
SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG
Sbjct: 121 SGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVG 180
Query: 181 HLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLILKRFDTHSKTNE 240
HLNKPSIQALIHGLNRHYYSIAINYR WTDGLILK FDTHSKTNE
Sbjct: 181 HLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLILKSFDTHSKTNE 240
Query: 241 QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT 300
QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT
Sbjct: 241 QTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT 300
Query: 301 MLDTVVF 307
MLDTVVF
Sbjct: 301 MLDTVVF 307
>Os06g0703600 Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S
proteasome regulatory subunit rpn11)
Length = 308
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 218/285 (76%), Gaps = 4/285 (1%)
Query: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
EQ+ +S LALLKMLKHGRAGVPMEVMGLMLGEFVD+YTV V DVFAMPQSGTGVSVEAVD
Sbjct: 24 EQINVSPLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVTVADVFAMPQSGTGVSVEAVD 83
Query: 87 HVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPI 146
H FQ+ ML+ML+QTGRPEMVVGWYHSHPGFGCWLSG D+ TQQSFE L+PRAVAVVIDP+
Sbjct: 84 HAFQSEMLEMLRQTGRPEMVVGWYHSHPGFGCWLSGTDMATQQSFEQLHPRAVAVVIDPV 143
Query: 147 QSVKGKVVIDAFRLINPQTMML----GQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIA 202
QSVKGKVV+DAFRL++ M+L G E RQTTSNVG + +PS AL+HGL RHYYS+A
Sbjct: 144 QSVKGKVVMDAFRLVDHMAMVLGGAAGGEARQTTSNVGAVARPSAVALVHGLGRHYYSLA 203
Query: 203 INYRXXXXXXXXXXXXXXXXWTDGLILKRFDTHSKTNEQTVQEMLNLAIKYNKAVQEEDE 262
I+YR W+DG L+RF H NE V+ M +LA+ Y V+EEDE
Sbjct: 204 ISYRMKEGEERMLACLSRSGWSDGFALRRFGAHDAGNEAAVRGMRDLAVGYGAQVREEDE 263
Query: 263 LPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 307
PPE+LA+ G+ DAK LEE + MS+NIVQTLG MLDTV F
Sbjct: 264 TPPERLAVVRAGKVDAKGKLEEKAMDAMSANIVQTLGMMLDTVTF 308
>Os07g0129600
Length = 307
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 153/299 (51%), Gaps = 43/299 (14%)
Query: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQ-SGTGVSVEAV 85
+ Y+S LALLK+L H P+ MG++LGE VD ++VRVVD F +P+ +G G +A+
Sbjct: 24 QTAYVSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLPRCAGGGAFTQAI 83
Query: 86 DHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDP 145
D + ML ML +T R E VVGWY S+PGF S D ++FE LNPRA+ V +DP
Sbjct: 84 DPRYIEGMLAMLNKTDRLEGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDP 143
Query: 146 IQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLN----------KP--SIQALIHG 193
++S G ++AFR + +T+SNVG LN KP + G
Sbjct: 144 VKSATGNFTMNAFRSVTSY--------HETSSNVGALNREYYSVAEDEKPFFELDIFAQG 195
Query: 194 LNRHYYSIAINYRXXX-----XXXXXXXXXXXXXWTDGLILKRFDTHSKTNEQTVQEML- 247
L +YSI I++R D L +F S++ ++ V+EML
Sbjct: 196 LASVFYSILISHRKNDLEINILKSMDKMGSKGSSSEDCRSLCQFPVMSESEKKNVEEMLI 255
Query: 248 NLAIKY--NKAVQEED--ELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTML 302
+L KY + +QE D E PP DA+ HLEE + NLMS+ I+Q G ML
Sbjct: 256 DLLTKYQNEEEMQESDAPENPP-----------DAENHLEE-LKNLMSACILQIFGMML 302
>Os04g0654700 Similar to COP9 signalosome complex subunit 5b (EC 3.4.-.-)
(Signalosome subunit 5b) (Jun activation domain-binding
homolog 1)
Length = 360
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 106/179 (59%), Gaps = 11/179 (6%)
Query: 31 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEAVDHV 88
IS+LALLKM+ H RAG +EVMGLM G+ D V V+D FA+P GT V+ +A +
Sbjct: 62 ISALALLKMVVHARAGGTIEVMGLMQGKCEGDAIV-VMDAFALPVEGTETRVNAQADAYE 120
Query: 89 FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPIQS 148
+ + KQ GR E VVGWYHSHPG+GCWLSG+D++TQ + +AVVIDP ++
Sbjct: 121 YMVEYSTINKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRT 180
Query: 149 VK-GKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQAL-IHGLNRHYYSIAINY 205
V GKV I AFR P+ EP + LNK I+ +H + YY++ I Y
Sbjct: 181 VSAGKVEIGAFRTY-PKDYKPPDEPVSEYQTIP-LNK--IEDFGVHC--KQYYALDITY 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,578,399
Number of extensions: 311632
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)