BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0349200 Os05g0349200|AK058281
(397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0349200 Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoad... 764 0.0
Os07g0693500 Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP d... 683 0.0
AF251072 137 1e-32
>Os05g0349200 Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase)
(AMP deaminase isoform M)
Length = 397
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/397 (93%), Positives = 371/397 (93%)
Query: 1 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL 60
LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL
Sbjct: 1 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL 60
Query: 61 TASKYQMAEYRISIYGRKQSEWDNLASWIVNNELSSENVVWLVQIPRLYNVYKEMGIVTS 120
TASKYQMAEYRISIYGRKQSEWDNLASWIVNNELSSENVVWLVQIPRLYNVYKEMGIVTS
Sbjct: 61 TASKYQMAEYRISIYGRKQSEWDNLASWIVNNELSSENVVWLVQIPRLYNVYKEMGIVTS 120
Query: 121 FQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTN 180
FQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTN
Sbjct: 121 FQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTN 180
Query: 181 VFNPAFSXXXXXXXXXXXXXXKLRESKGMTTIKFRPHAGEAGDIDHLAATFLLCHNISHG 240
VFNPAFS KLRESKGMTTIKFRPHAGEAGDIDHLAATFLLCHNISHG
Sbjct: 181 VFNPAFSYYAYYCYANLYTLNKLRESKGMTTIKFRPHAGEAGDIDHLAATFLLCHNISHG 240
Query: 241 INLRKSPVXXXXXXXXXXXXAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIH 300
INLRKSPV AMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIH
Sbjct: 241 INLRKSPVLQYLYYLGQIGLAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIH 300
Query: 301 LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHALKAHWIGKNYYKRGPTGNDI 360
LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHALKAHWIGKNYYKRGPTGNDI
Sbjct: 301 LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHALKAHWIGKNYYKRGPTGNDI 360
Query: 361 HKTNVPHIRVQFRDLIWRDEMRLVYLNNVILPDEVDQ 397
HKTNVPHIRVQFRDLIWRDEMRLVYLNNVILPDEVDQ
Sbjct: 361 HKTNVPHIRVQFRDLIWRDEMRLVYLNNVILPDEVDQ 397
>Os07g0693500 Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L).
Splice isoform Ex1A-3
Length = 815
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/397 (81%), Positives = 350/397 (88%)
Query: 1 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL 60
LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTK+VFSDL
Sbjct: 419 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFSDL 478
Query: 61 TASKYQMAEYRISIYGRKQSEWDNLASWIVNNELSSENVVWLVQIPRLYNVYKEMGIVTS 120
ASKYQMAEYRISIYGRK+SEWD +ASWIVNNEL SENVVWL+QIPR+YNVY+EMG + S
Sbjct: 479 EASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYREMGTINS 538
Query: 121 FQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTN 180
FQ LLDNIFLPLFEVT+DPASHPQLHVFL+QVVGLDLVDDESKPERRPTKHMPTPEQWTN
Sbjct: 539 FQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDDESKPERRPTKHMPTPEQWTN 598
Query: 181 VFNPAFSXXXXXXXXXXXXXXKLRESKGMTTIKFRPHAGEAGDIDHLAATFLLCHNISHG 240
VFNPA++ KLRESKGMTTIK RPH GEAGDIDHLAA FL HNI+HG
Sbjct: 599 VFNPAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHG 658
Query: 241 INLRKSPVXXXXXXXXXXXXAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIH 300
+NL+KSPV AMSPLSNNSLF+DYHRNPFP FF RGLNVSLSTDDPLQIH
Sbjct: 659 VNLKKSPVLQYLYYLAQIGLAMSPLSNNSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIH 718
Query: 301 LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHALKAHWIGKNYYKRGPTGNDI 360
LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSH LK+HWIG+NYYKRG GNDI
Sbjct: 719 LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHRLKSHWIGRNYYKRGHDGNDI 778
Query: 361 HKTNVPHIRVQFRDLIWRDEMRLVYLNNVILPDEVDQ 397
H+TNVPHIR++FR IW++EM L++L NV +P+E+D+
Sbjct: 779 HQTNVPHIRIEFRHTIWKEEMELIHLRNVDIPEEIDR 815
>AF251072
Length = 153
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 9/155 (5%)
Query: 99 VVWLVQIPRLYNVYKEMGIVTSFQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLV 158
+ W++Q+PR+Y+V++ + F +L+NIF+P+FE TI+P + P+L VFLK + G D V
Sbjct: 1 MTWMIQVPRIYDVFRSKNFLPHFGKMLENIFMPVFEATINPQADPELSVFLKHITGFDSV 60
Query: 159 DDESKPERRPTKHM-----PTPEQWTNVFNPAFSXXXXXXXXXXXXXXKLRESKGMTTIK 213
DDESK + HM P P++WT NP+++ LR+ +GM T
Sbjct: 61 DDESK----HSGHMFSSKSPKPQEWTLEKNPSYTYYAYYMYANIMVLNSLRKERGMNTFL 116
Query: 214 FRPHAGEAGDIDHLAATFLLCHNISHGINLRKSPV 248
FRPH GEAG + HL F++ +ISHG+NL+KSPV
Sbjct: 117 FRPHCGEAGALTHLMTAFMIADDISHGLNLKKSPV 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,019,047
Number of extensions: 510771
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 3
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)