Os07g0693500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3.
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Os07g0693500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.74 | 0.331 | 10.6 | -1.2 | 0.172 | 0.182 | 0.876 | -3.82 | -0.22 | 2.38 | 36.09 | 1640 | -- | -- |
| 59.59 | 0.362 | 10.6 | -0.856 | 0.267 | 0.663 | 1.1 | -- | -0.109 | 1.88 | 26.92 | 1601 | -- | -- |
| 52.2 | 0.336 | 10.6 | -1.21 | 0.187 | 0.269 | -- | -3.96 | -0.257 | 3.18 | 36.65 | 1698 | -- | -- |
| 55.2 | 0.346 | 10.6 | -0.838 | 0.154 | 1.22 | -- | -- | -0.198 | 4.1 | 66.8 | 1906 | -- | -- |
| 54.21 | 0.343 | 10.6 | -1.22 | -- | 0.188 | -- | -4.04 | -0.217 | -- | 38 | 1639 | -- | -- |
| 66.88 | 0.383 | 10.6 | -0.858 | 0.0961 | -- | 1.12 | -- | -0.113 | 1.7 | -- | -- | -- | -- |
| 70.88 | 0.394 | 10.6 | -0.896 | 0.171 | -- | -- | -- | -0.122 | 5.15 | -- | -- | -- | -- |
| 47.78 | 0.322 | 10.5 | -0.0422 | -- | 1.23 | -- | -- | 0.13 | -- | 80 | 16496 | -- | -- |
| 52.92 | 0.339 | 10.6 | -- | 0.223 | 2.2 | -- | -- | 0.0755 | 3.99 | 66.84 | 1969 | -- | -- |
| 72.41 | 0.398 | 10.6 | -0.89 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 92.05 | 0.449 | 10.6 | -- | 0.156 | -- | -- | -- | -0.0217 | 5.35 | -- | -- | -- | -- |
| 47.69 | 0.322 | 10.5 | -- | -- | 1.24 | -- | -- | 0.143 | -- | 79.85 | 16288 | -- | -- |
| 93.31 | 0.451 | 10.6 | -- | -- | -- | -- | -- | -0.0184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 2 | 42.32 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 7 | 42.49 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 12 | 42.59 | humidity | 80 | 43200 | > th | dose dependent | sin | 3 | NA |
| 13 | 42.65 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 18 | 42.85 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 18 |
| 23 | 42.96 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 27 | 43.02 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 29 | 43.04 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 36 | 43.12 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 38 | 43.14 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 40 | 43.16 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 75 | 43.31 | temperature | 15 | 43200 | < th | dose dependent | sin | 3 | NA |
| 173 | 43.62 | temperature | 15 | 43200 | < th | dose dependent | rect. | 12 | 20 |
| 182 | 43.63 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 206 | 43.65 | temperature | 15 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 304 | 43.81 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 408 | 44.17 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 419 | 44.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 431 | 44.29 | humidity | 90 | 43200 | < th | dose independent | sin | 5 | NA |
| 441 | 44.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 444 | 44.34 | temperature | 15 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 448 | 44.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 449 | 44.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 450 | 44.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 489 | 44.47 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 499 | 44.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 514 | 44.52 | temperature | 15 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 519 | 44.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 543 | 44.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 547 | 44.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 548 | 44.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 564 | 44.61 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 565 | 44.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 585 | 44.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 627 | 44.72 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 635 | 44.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 676 | 44.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 684 | 44.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 703 | 44.84 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 723 | 44.86 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 747 | 44.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 770 | 44.94 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 791 | 44.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 873 | 45.08 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 891 | 45.10 | temperature | 15 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 902 | 45.12 | temperature | 15 | 43200 | < th | dose independent | sin | 3 | NA |
| 935 | 45.16 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 975 | 45.21 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 983 | 45.22 | humidity | 80 | 43200 | > th | dose dependent | sin | 18 | NA |
| 995 | 45.24 | temperature | 15 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 996 | 45.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 7 |