Os05g0349200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase) (AMP deaminase isoform M).
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Os05g0349200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase) (AMP deaminase isoform M).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.79 | 0.321 | 11.1 | -0.159 | 1.24 | -0.17 | -0.0731 | -2.71 | 0.0254 | 19.6 | 0.8003 | 1503 | -- | -- |
| 50.13 | 0.33 | 11.2 | -0.485 | 1.24 | -0.264 | -0.324 | -- | -0.152 | 19.7 | 40.07 | 20066 | -- | -- |
| 46.5 | 0.318 | 11.1 | -0.167 | 1.25 | -0.314 | -- | -3.05 | 0.0182 | 19.7 | 0.3707 | 1520 | -- | -- |
| 50.17 | 0.33 | 11.2 | -0.448 | 1.23 | -0.243 | -- | -- | -0.132 | 19.5 | 43.02 | 20020 | -- | -- |
| 97.9 | 0.461 | 11.2 | -0.215 | -- | -1.69 | -- | -2.23 | 0.0413 | -- | 3.843 | 3701 | -- | -- |
| 52.18 | 0.339 | 11.2 | -0.491 | 1.24 | -- | -0.322 | -- | -0.0478 | 19.6 | -- | -- | -- | -- |
| 52.46 | 0.339 | 11.2 | -0.483 | 1.24 | -- | -- | -- | -0.0481 | 19.6 | -- | -- | -- | -- |
| 91.96 | 0.447 | 11.2 | -0.398 | -- | -1.51 | -- | -- | 0.0288 | -- | 3.72 | 3704 | -- | -- |
| 52.71 | 0.338 | 11.2 | -- | 1.17 | -0.408 | -- | -- | -0.0419 | 19.5 | 50 | 22865 | -- | -- |
| 134.44 | 0.542 | 11.1 | -0.501 | -- | -- | -- | -- | -0.0672 | -- | -- | -- | -- | -- |
| 58.61 | 0.358 | 11.2 | -- | 1.24 | -- | -- | -- | 0.00565 | 19.5 | -- | -- | -- | -- |
| 95.45 | 0.455 | 11.2 | -- | -- | -1.5 | -- | -- | 0.0218 | -- | 3.71 | 3746 | -- | -- |
| 141.06 | 0.554 | 11.1 | -- | -- | -- | -- | -- | -0.0116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.95 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 2 |
| 3 | 46.31 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 19 | 46.58 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 55 | 46.74 | temperature | 25.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 65 | 46.80 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 66 | 46.80 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 74 | 46.82 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 85 | 46.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 90 | 46.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 101 | 46.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 111 | 46.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 125 | 46.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 134 | 46.95 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 148 | 46.98 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 152 | 46.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 161 | 46.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 169 | 47.00 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 197 | 47.07 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 199 | 47.07 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 224 | 47.12 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 232 | 47.15 | temperature | 25.0 | 720 | < th | dose independent | rect. | 24 | 11 |
| 233 | 47.15 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 244 | 47.17 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 249 | 47.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 250 | 47.18 | radiation | 40.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 261 | 47.20 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 269 | 47.21 | radiation | 1.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 270 | 47.21 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 290 | 47.23 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 291 | 47.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 296 | 47.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 313 | 47.24 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 323 | 47.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 335 | 47.26 | temperature | 25.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 346 | 47.27 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 352 | 47.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 364 | 47.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 365 | 47.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 369 | 47.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 378 | 47.31 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 379 | 47.31 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 398 | 47.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 425 | 47.33 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 427 | 47.34 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 445 | 47.34 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 456 | 47.35 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 13 | 22 |
| 457 | 47.36 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 475 | 47.36 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 22 | 11 |
| 487 | 47.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 494 | 47.38 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 499 | 47.39 | radiation | 10.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 500 | 47.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 531 | 47.41 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 11 |
| 534 | 47.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 556 | 47.42 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 557 | 47.43 | temperature | 25.0 | 270 | > th | dose independent | sin | 3 | NA |
| 568 | 47.43 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 18 |
| 578 | 47.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 605 | 47.46 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 610 | 47.46 | radiation | 40.0 | 90 | > th | dose dependent | no | NA | NA |
| 614 | 47.46 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 781 | 47.47 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 836 | 47.49 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 892 | 47.52 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 911 | 47.54 | radiation | 1.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 956 | 47.56 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 986 | 47.57 | temperature | 30.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 989 | 47.57 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 4 | 10 |