BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0349200 Os05g0349200|AK058281
         (397 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38280.1  | chr2:16033767-16038793 REVERSE LENGTH=840          690   0.0  

>AT2G38280.1 | chr2:16033767-16038793 REVERSE LENGTH=840
          Length = 839

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/395 (82%), Positives = 347/395 (87%)

Query: 1   LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDL 60
           LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFL E+TKQVFSDL
Sbjct: 443 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDL 502

Query: 61  TASKYQMAEYRISIYGRKQSEWDNLASWIVNNELSSENVVWLVQIPRLYNVYKEMGIVTS 120
            ASKYQMAEYRISIYGRK SEWD LASWIVNN+L SENVVWL+Q+PRLYN+YK+MGIVTS
Sbjct: 503 EASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTS 562

Query: 121 FQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTN 180
           FQ +LDNIF+PLFE T+DP SHPQLHVFLKQVVG DLVDDESKPERRPTKHMPTP QWTN
Sbjct: 563 FQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRPTKHMPTPAQWTN 622

Query: 181 VFNPAFSXXXXXXXXXXXXXXKLRESKGMTTIKFRPHAGEAGDIDHLAATFLLCHNISHG 240
            FNPAFS              KLRESKGMTTI  RPH+GEAGDIDHLAATFL CH+I+HG
Sbjct: 623 AFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHG 682

Query: 241 INLRKSPVXXXXXXXXXXXXAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSTDDPLQIH 300
           INLRKSPV            AMSPLSNNSLFLDYHRNPFP+FF RGLNVSLSTDDPLQIH
Sbjct: 683 INLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIH 742

Query: 301 LTKEPLVEEYSIAASLWKLSSCDLCEIARNSVYQSGFSHALKAHWIGKNYYKRGPTGNDI 360
           LTKEPLVEEYSIAAS+WKLS+CDLCEIARNSVYQSGFSHALK+HWIGK+YYKRGP GNDI
Sbjct: 743 LTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDI 802

Query: 361 HKTNVPHIRVQFRDLIWRDEMRLVYLNNVILPDEV 395
           HKTNVPHIRV+FRD IW++EM+ VYL   ++ DEV
Sbjct: 803 HKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEV 837



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,667,619
Number of extensions: 348486
Number of successful extensions: 624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,337,553
Effective search space: 2467915688
Effective search space used: 2467915688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)