BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0346300 Os05g0346300|AK061627
         (192 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0346300  Similar to 40S ribosomal protein S7                 390   e-109
AK108329                                                          162   2e-40
Os03g0297100  Similar to 40S ribosomal protein S7                 132   2e-31
Os02g0324500  Similar to 40S ribosomal protein S7                 122   1e-28

>Os05g0346300 Similar to 40S ribosomal protein S7
          Length = 192

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60
           MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA
Sbjct: 1   MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60

Query: 61  VIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120
           VIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT
Sbjct: 61  VIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120

Query: 121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180
           AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK
Sbjct: 121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180

Query: 181 DVVFDYPMTETA 192
           DVVFDYPMTETA
Sbjct: 181 DVVFDYPMTETA 192



>AK108329 
          Length = 201

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 118/180 (65%), Gaps = 6/180 (3%)

Query: 15  EPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYK 74
           +P+E E  +A A +DLE    E+K+ L+ L    A +++    +KA++I+VP  L + + 
Sbjct: 18  KPSEVEQQIATALYDLETSVPEMKAALRPLQFVSAREIETGHGKKAIVIFVPVPLPQGWH 77

Query: 75  KIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGS------AVVRPRTRTLTAVHDGILE 128
           +   RL RELEKKFS + V+++A+RRI+  PK+ +         RP +RTLTAVHD IL 
Sbjct: 78  RSQQRLTRELEKKFSDRHVLIIASRRILPRPKRSNRSRTTQTQKRPISRTLTAVHDAILA 137

Query: 129 DVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPM 188
           D+VYP EIVGKR+R   D  K++K+ LD KER   +Y+LDT+S VY+RL GK V F++P 
Sbjct: 138 DLVYPVEIVGKRIRTKEDNTKVLKVVLDEKERGGVDYRLDTYSEVYKRLTGKGVNFEFPQ 197



>Os03g0297100 Similar to 40S ribosomal protein S7
          Length = 134

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 85  EKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYH 144
           E++  G    + + + I   P +     R   +      D ILEDVVYPAEIVGKR+RY 
Sbjct: 28  EQEGCGDSRAVPSAQGIQENPCQACQGAREEVQR-QGCGDCILEDVVYPAEIVGKRIRYR 86

Query: 145 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTETA 192
           LDG K++KIFLDPKERNNTEYKL+TFS+VYRRLCGKDV F+YPMTETA
Sbjct: 87  LDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMTETA 134



>Os02g0324500 Similar to 40S ribosomal protein S7
          Length = 145

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 69/90 (76%)

Query: 50  VQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGS 109
            QMD+  N K V+I+V Y L KA+KKIHVRLV+ELEKKFSGKDVV  ATRRIVRP  KGS
Sbjct: 51  CQMDVAANWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIVRPLNKGS 110

Query: 110 AVVRPRTRTLTAVHDGILEDVVYPAEIVGK 139
           AV  PRTRTL  VHDGILEDVV    ++G 
Sbjct: 111 AVHHPRTRTLITVHDGILEDVVSQLRLLGS 140



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,387,290
Number of extensions: 259107
Number of successful extensions: 664
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 4
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)