Os05g0346300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S7.
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Os05g0346300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.11 | 0.407 | 13.2 | 0.0837 | 0.7 | 1.38 | 1.02 | -0.932 | 0.0106 | 18.7 | 18.3 | 89 | -- | -- |
| 75.9 | 0.406 | 13.2 | 0.231 | 0.695 | 1.38 | 0.945 | -- | 0.0543 | 18.8 | 18 | 91 | -- | -- |
| 77.65 | 0.41 | 13.2 | 0.109 | 0.701 | 1.42 | -- | -0.637 | 0.0221 | 18.8 | 18.1 | 86 | -- | -- |
| 78.07 | 0.412 | 13.2 | 0.214 | 0.697 | 1.41 | -- | -- | 0.0507 | 18.8 | 18 | 86 | -- | -- |
| 95.41 | 0.455 | 13.2 | -0.0637 | -- | 1.77 | -- | -0.945 | -0.0686 | -- | 18.39 | 218 | -- | -- |
| 102.32 | 0.474 | 13.2 | 0.537 | 1.05 | -- | 1.1 | -- | 0.28 | 17.4 | -- | -- | -- | -- |
| 105.31 | 0.481 | 13.1 | 0.536 | 1.05 | -- | -- | -- | 0.285 | 17.3 | -- | -- | -- | -- |
| 95.95 | 0.456 | 13.2 | 0.102 | -- | 1.78 | -- | -- | -0.0241 | -- | 18.2 | 225 | -- | -- |
| 79.15 | 0.414 | 13.2 | -- | 0.677 | 1.5 | -- | -- | 0.0155 | 18.9 | 17.9 | 88 | -- | -- |
| 163.09 | 0.597 | 13.1 | 0.499 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 112.87 | 0.497 | 13.2 | -- | 1.04 | -- | -- | -- | 0.225 | 17.3 | -- | -- | -- | -- |
| 96.2 | 0.457 | 13.2 | -- | -- | 1.81 | -- | -- | -0.0352 | -- | 18.05 | 221 | -- | -- |
| 169.66 | 0.608 | 13.1 | -- | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 67.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 4 | 67.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 49 | 70.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 53 | 70.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 109 | 72.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 123 | 72.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 126 | 72.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 129 | 72.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 135 | 73.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 146 | 73.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 159 | 73.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 160 | 73.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 168 | 73.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 188 | 73.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 230 | 73.57 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 232 | 73.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 296 | 73.80 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 335 | 73.95 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 352 | 74.03 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 504 | 74.55 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 647 | 74.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 723 | 75.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 774 | 75.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 777 | 75.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 925 | 75.68 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 979 | 75.81 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |