Os03g0297100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S7.
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Os03g0297100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.86 | 0.357 | 12.7 | 0.075 | 0.63 | 0.293 | 0.348 | -2.11 | -0.104 | 18.8 | 20.01 | 4258 | -- | -- |
| 61.18 | 0.364 | 12.6 | 0.385 | 0.625 | 0.858 | 0.242 | -- | -0.0306 | 18.5 | 19.3 | 2956 | -- | -- |
| 57.15 | 0.352 | 12.6 | 0.113 | 0.638 | 0.372 | -- | -1.97 | -0.0866 | 18.7 | 19.85 | 2907 | -- | -- |
| 60.94 | 0.364 | 12.6 | 0.37 | 0.638 | 0.914 | -- | -- | -0.0139 | 18.7 | 18.8 | 2977 | -- | -- |
| 78.15 | 0.412 | 12.6 | 0.132 | -- | 0.361 | -- | -1.9 | -0.0869 | -- | 19.7 | 2988 | -- | -- |
| 72.11 | 0.398 | 12.5 | 0.819 | 0.616 | -- | 0.494 | -- | 0.16 | 18.8 | -- | -- | -- | -- |
| 72.73 | 0.399 | 12.5 | 0.811 | 0.618 | -- | -- | -- | 0.162 | 18.8 | -- | -- | -- | -- |
| 81.66 | 0.421 | 12.6 | 0.352 | -- | 0.878 | -- | -- | -0.0302 | -- | 19 | 3321 | -- | -- |
| 62.51 | 0.368 | 12.6 | -- | 0.634 | 1.03 | -- | -- | -0.103 | 18.7 | 18.3 | 11461 | -- | -- |
| 92.69 | 0.45 | 12.5 | 0.797 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 90.07 | 0.444 | 12.6 | -- | 0.608 | -- | -- | -- | 0.0714 | 18.9 | -- | -- | -- | -- |
| 81.6 | 0.421 | 12.6 | -- | -- | 0.964 | -- | -- | -0.084 | -- | 16.5 | 24224 | -- | -- |
| 109.45 | 0.488 | 12.5 | -- | -- | -- | -- | -- | 0.0612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 3 | 56.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 4 | 56.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 5 | 56.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 39 | 56.73 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 48 | 56.79 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 122 | 57.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 152 | 57.32 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 204 | 57.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 207 | 57.53 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 271 | 57.74 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 304 | 57.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 336 | 57.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 341 | 57.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 362 | 57.86 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 379 | 57.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 387 | 57.88 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 435 | 57.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 450 | 57.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 511 | 58.08 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 525 | 58.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 557 | 58.14 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 576 | 58.18 | temperature | 15 | 4320 | > th | dose dependent | sin | 17 | NA |
| 623 | 58.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 665 | 58.30 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 694 | 58.35 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 717 | 58.38 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 718 | 58.38 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 729 | 58.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 767 | 58.42 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 807 | 58.45 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 811 | 58.45 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 834 | 58.47 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 840 | 58.48 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 876 | 58.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 941 | 58.57 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 953 | 58.58 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 967 | 58.59 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |