BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0297100 Os03g0297100|AK061276
         (134 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0297100  Similar to 40S ribosomal protein S7                 275   7e-75
Os05g0346300  Similar to 40S ribosomal protein S7                 132   1e-31
AK108329                                                           88   2e-18

>Os03g0297100 Similar to 40S ribosomal protein S7
          Length = 134

 Score =  275 bits (703), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   PREWQPGAQERAQGPVHQQCSPDGYCREQEGCGDSRAVPSAQGIQENPCQACQGAREEVQ 60
           PREWQPGAQERAQGPVHQQCSPDGYCREQEGCGDSRAVPSAQGIQENPCQACQGAREEVQ
Sbjct: 1   PREWQPGAQERAQGPVHQQCSPDGYCREQEGCGDSRAVPSAQGIQENPCQACQGAREEVQ 60

Query: 61  RQGCGDCILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLC 120
           RQGCGDCILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLC
Sbjct: 61  RQGCGDCILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLC 120

Query: 121 GKDVAFEYPMTETA 134
           GKDVAFEYPMTETA
Sbjct: 121 GKDVAFEYPMTETA 134



>Os05g0346300 Similar to 40S ribosomal protein S7
          Length = 192

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 28  EQEGCGDSRAVPSAQGIQENPCQACQGAREEVQR-QGCGDCILEDVVYPAEIVGKRIRYR 86
           E++  G    + + + I   P +     R   +      D ILEDVVYPAEIVGKR+RY 
Sbjct: 85  EKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYH 144

Query: 87  LDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYPMTETA 134
           LDG K++KIFLDPKERNNTEYKL+TFS+VYRRLCGKDV F+YPMTETA
Sbjct: 145 LDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTETA 192



>AK108329 
          Length = 201

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 45  QENPCQACQGAREEVQRQ--GCGDCILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKER 102
           + N  +  Q  +  + R      D IL D+VYP EIVGKRIR + D  KV+K+ LD KER
Sbjct: 110 RSNRSRTTQTQKRPISRTLTAVHDAILADLVYPVEIVGKRIRTKEDNTKVLKVVLDEKER 169

Query: 103 NNTEYKLETFSAVYRRLCGKDVAFEYP 129
              +Y+L+T+S VY+RL GK V FE+P
Sbjct: 170 GGVDYRLDTYSEVYKRLTGKGVNFEFP 196



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,152,180
Number of extensions: 212157
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 3
Length of query: 134
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 44
Effective length of database: 12,336,541
Effective search space: 542807804
Effective search space used: 542807804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)