BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0324000 Os05g0324000|AK103719
(581 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0324000 Conserved hypothetical protein 783 0.0
Os05g0313700 Conserved hypothetical protein 257 1e-68
Os02g0604500 77 2e-14
>Os05g0324000 Conserved hypothetical protein
Length = 581
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/557 (76%), Positives = 426/557 (76%)
Query: 1 MAVGMXXXXXXXXXXXXXXXXXXXIQSERQVVGGLLKKAEALVARAKEDVHGGRAAAAHS 60
MAVGM IQSERQVVGGLLKKAEALVARAKEDVHGGRAAAAHS
Sbjct: 1 MAVGMAPPPPTAAALPSRRRLRERIQSERQVVGGLLKKAEALVARAKEDVHGGRAAAAHS 60
Query: 61 EACALPRRGRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEVEVIEPTMPKA 120
EACALPRRGRFL IVEVEVIEPTMPKA
Sbjct: 61 EACALPRRGRFLRRPEARPEAEATAAMDGAASPRKKRRKAATSASSIVEVEVIEPTMPKA 120
Query: 121 QRDRLYGLLSSLSAEMPLPPHIVALMQSQCCCVVDPNGEEMDVDLGSAKDAALFQLLNLL 180
QRDRLYGLLSSLSAEMPLPPHIVALMQSQCCCVVDPNGEEMDVDLGSAKDAALFQLLNLL
Sbjct: 121 QRDRLYGLLSSLSAEMPLPPHIVALMQSQCCCVVDPNGEEMDVDLGSAKDAALFQLLNLL 180
Query: 181 EEFAQQQTTKIQPRLAEEQEPPKIEAPDATSRSSSICQLMEDGEVADEGADMDMDICGGV 240
EEFAQQQTTKIQPRLAEEQEPPKIEAPDATSRSSSICQLMEDGEVADEGADMDMDICGGV
Sbjct: 181 EEFAQQQTTKIQPRLAEEQEPPKIEAPDATSRSSSICQLMEDGEVADEGADMDMDICGGV 240
Query: 241 SPLVVDKVQFSPLPKQEEDDELINTSGGGGFSLQSPPAKQQEEEFVRDASPVAVDKFPQT 300
SPLVVDKVQFSPLPKQEEDDELINTSGGGGFSLQSPPAKQQEEEFVRDASPVAVDKFPQT
Sbjct: 241 SPLVVDKVQFSPLPKQEEDDELINTSGGGGFSLQSPPAKQQEEEFVRDASPVAVDKFPQT 300
Query: 301 EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDNSELPTEAAA 360
E RPDNSELPTEAAA
Sbjct: 301 ESPSSSTGSSSGSSSSSSSSGGSSGSSCSGCSSSGSDSNDDGDSASSRPDNSELPTEAAA 360
Query: 361 KPLEQQQVTVCGGVSPLIDEFSPLPKQQEDDELIDVTGGVSPVSVNKFPDSPRXXXXXXX 420
KPLEQQQVTVCGGVSPLIDEFSPLPKQQEDDELIDVTGGVSPVSVNKFPDSPR
Sbjct: 361 KPLEQQQVTVCGGVSPLIDEFSPLPKQQEDDELIDVTGGVSPVSVNKFPDSPRSSSSGSS 420
Query: 421 XXXXXXXXXXXXXXXXXXXXXXXXXKPDTADHPTEAEAPKLQPLEQHEVAEQDKKLIAER 480
KPDTADHPTEAEAPKLQPLEQHEVAEQDKKLIAER
Sbjct: 421 SSSSSGSSSSSSESDSDDDGDSASSKPDTADHPTEAEAPKLQPLEQHEVAEQDKKLIAER 480
Query: 481 AASPNTEMQELIARAQERQKLRLELERKTARELERKMAREQLQEMERTARPVYDSIDPSV 540
AASPNTEMQELIARAQERQKLRLELERKTARELERKMAREQLQEMERTARPVYDSIDPSV
Sbjct: 481 AASPNTEMQELIARAQERQKLRLELERKTARELERKMAREQLQEMERTARPVYDSIDPSV 540
Query: 541 MKQLGISGDAQYIVSPV 557
MKQLGISGDAQYIVSPV
Sbjct: 541 MKQLGISGDAQYIVSPV 557
>Os05g0313700 Conserved hypothetical protein
Length = 607
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 174/280 (62%), Gaps = 30/280 (10%)
Query: 25 IQSERQVVGGLLKKAEALVARAKEDVHGGRAAAAHSEACALPRRG----RFLXXXXXXXX 80
I SE QVV LL KAEALV A+ G AAAA + P RG RFL
Sbjct: 12 IHSEHQVVAALLDKAEALVMAARAKGAHGGAAAAGEQHPDHPSRGKKSGRFLRRQETPPE 71
Query: 81 XXXXXXXXXXXXXXXXXXXXXXXXXXIVEVEVIEPTMPKAQRDRLYGLLSSLSAEMPLPP 140
+ + EPTMPKAQRDRLYGLL+SLSA+ PLPP
Sbjct: 72 AATAIDGDVSPPEKRRKTTAASPIVEVEVEVI-EPTMPKAQRDRLYGLLASLSADTPLPP 130
Query: 141 HIVALMQSQCCCVVDPNGEEMDVDLGSAKDAALFQLLNLLEEFAQQQTTKIQPRLAEEQE 200
HIV LM+SQCCCVVDPNGEEMDVDL SAKDAALFQLLNLL EFAQQQTTKI EEQE
Sbjct: 131 HIVGLMRSQCCCVVDPNGEEMDVDLSSAKDAALFQLLNLLVEFAQQQTTKI----IEEQE 186
Query: 201 PPKIEAPDATSRSSSICQLMEDGEVADEGADMDMDICGGVSPLVVDKVQFSPLPKQEEDD 260
PPKIEA DATS SSSIC L+EDGE+ADEGA M MDICGGVSPL+VD Q PLPKQ+EDD
Sbjct: 187 PPKIEASDATS-SSSICDLLEDGEIADEGAAMGMDICGGVSPLIVDSAQLLPLPKQQEDD 245
Query: 261 ELINTSGGGGFSLQSPPAKQQEEEFVRDASPVAVDKFPQT 300
ELI+ GG SPV+V+ FP +
Sbjct: 246 ELIDIYGG--------------------VSPVSVNNFPDS 265
Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 151/242 (62%), Gaps = 43/242 (17%)
Query: 351 NSELPTE-AAAKPLEQQQVT-----VCGGVSPLI---DEFSPLPKQQ-EDDELIDVTGGV 400
+ +L TE AAA P Q +T +CGGVSPL+ +FSPLPKQQ EDDELID+ GG+
Sbjct: 349 DKKLTTERAAASPASQLCITDMGIDICGGVSPLVVDKAQFSPLPKQQQEDDELIDICGGI 408
Query: 401 -SPVSVNKFPDSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPDT-ADHPTEAEA 458
SPVSV+KFP++PR +PDT ADHPTEAE
Sbjct: 409 DSPVSVSKFPETPRSSSSDSSSSSSCSGSSSSSERNDSASS-----RPDTTADHPTEAE- 462
Query: 459 PKLQPLEQHEV-----------------------AEQDKKLIAERAASPNTEMQELIARA 495
++P+E+ ++ + ++LI ERAASP TEMQELIARA
Sbjct: 463 --VKPMEEQKLIIERAASPHTEMQELITERAASPHTEMQELITERAASPRTEMQELIARA 520
Query: 496 QERQKLRLELERKTARELERKMAREQLQEMERTARPVYDSIDPSVMKQLGISGDAQYIVS 555
QERQKL+ ELER+ ARELERK AREQLQEM+RTA+PV+D IDP MKQLGISG+AQYIVS
Sbjct: 521 QERQKLQRELEREAARELERKAAREQLQEMKRTAQPVFDIIDPRDMKQLGISGEAQYIVS 580
Query: 556 PV 557
PV
Sbjct: 581 PV 582
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 8/67 (11%)
Query: 350 DNSELPTEAAAKPLEQQQVTVCGGVSPLI---DEFSPLPKQQEDDELIDVTGGVSPVSVN 406
++ E+ E AA ++ +CGGVSPLI + PLPKQQEDDELID+ GGVSPVSVN
Sbjct: 206 EDGEIADEGAAMGMD-----ICGGVSPLIVDSAQLLPLPKQQEDDELIDIYGGVSPVSVN 260
Query: 407 KFPDSPR 413
FPDSPR
Sbjct: 261 NFPDSPR 267
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 44/72 (61%), Gaps = 20/72 (27%)
Query: 230 ADMDMDICGGVSPLVVDKVQFSPLPK-QEEDDELINTSGGGGFSLQSPPAKQQEEEFVRD 288
DM +DICGGVSPLVVDK QFSPLPK Q+EDDELI+ GG
Sbjct: 368 TDMGIDICGGVSPLVVDKAQFSPLPKQQQEDDELIDICGGID------------------ 409
Query: 289 ASPVAVDKFPQT 300
SPV+V KFP+T
Sbjct: 410 -SPVSVSKFPET 420
>Os02g0604500
Length = 357
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 96/200 (48%), Gaps = 49/200 (24%)
Query: 116 TMPKAQRDRLYGLLSSLSAEMPLPPHIVALMQSQCCCV----VDPNGEEMDVDLGSAKDA 171
M AQ+++L GLLSSL A + LP H+ M+ +C VD + +E+++DLGS +DA
Sbjct: 64 AMTMAQKEQLVGLLSSLPAGI-LPSHVADFMRRRCSWRAVPGVDGDDDELEIDLGSTEDA 122
Query: 172 ALFQLLNLLEEFAQQQTTKIQPRLAEEQEPPKIEAPDATSRSSSICQLMEDGEVADEGAD 231
ALF+L +L++ A + T PR +EDGEVADE
Sbjct: 123 ALFELRKMLDDEAAVRRT--SPR------------------------GLEDGEVADEY-- 154
Query: 232 MDMDICGGVSPL------VVDKVQFSPLPKQEEDDELINTSGGGG-------FSLQSPPA 278
MDICGGVSPL SP E++D+LI+ GG SP
Sbjct: 155 --MDICGGVSPLPAAARKPPPLALSSPPAAAEQEDDLIDIFGGDSPLPAHEDLLDASPLV 212
Query: 279 KQQEEEFVRDASPVAVDKFP 298
K + +EFV D +DK P
Sbjct: 213 KPEADEFV-DIDGDTIDKSP 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,646,731
Number of extensions: 617215
Number of successful extensions: 2096
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2070
Number of HSP's successfully gapped: 10
Length of query: 581
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 475
Effective length of database: 11,501,117
Effective search space: 5463030575
Effective search space used: 5463030575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)