BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0301600 Os05g0301600|AK073928
         (165 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0301600  Protein phosphatase inhibitor 2 (IPP-2) family...   281   2e-76
Os02g0602300  Similar to Myelin transcription factor 1 (MYT1...    92   2e-19

>Os05g0301600 Protein phosphatase inhibitor 2 (IPP-2) family protein
          Length = 165

 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/165 (84%), Positives = 140/165 (84%)

Query: 1   MSSRRVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVDDDGSLSPTRPFDKCLDETVNAE 60
           MSSRRVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVDDDGSLSPTRPFDKCLDETVNAE
Sbjct: 1   MSSRRVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVDDDGSLSPTRPFDKCLDETVNAE 60

Query: 61  AILTALNGVASSSKTXXXXXXXXXXXXXXXXXXXXXXXXXEKSRLSFKEHRRAHYDEFLK 120
           AILTALNGVASSSKT                         EKSRLSFKEHRRAHYDEFLK
Sbjct: 61  AILTALNGVASSSKTDPKDDGWASSDDDADAMEQDDDPEAEKSRLSFKEHRRAHYDEFLK 120

Query: 121 VKELMRSGSLIDDEADEDDRGAKGSQAKAVGKKPAGCDSTPPPQT 165
           VKELMRSGSLIDDEADEDDRGAKGSQAKAVGKKPAGCDSTPPPQT
Sbjct: 121 VKELMRSGSLIDDEADEDDRGAKGSQAKAVGKKPAGCDSTPPPQT 165



>Os02g0602300 Similar to Myelin transcription factor 1 (MYT1) (MYTI)
          (Proteolipid protein binding protein) (PLPB1)
          Length = 177

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 5  RVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVD-DDGSLSPTRPFDKCLDETVNAEAIL 63
          RVKWNE+NL +IES KPVR+KITEPKTPYH M+D DDG++SP R  ++ +D++ +A+AI 
Sbjct: 16 RVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRTIEESVDKSTHADAIK 75

Query: 64 TALNGVASSSK 74
          TAL    SS K
Sbjct: 76 TALMEAVSSGK 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,571,211
Number of extensions: 204525
Number of successful extensions: 568
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 72
Effective length of database: 12,179,899
Effective search space: 876952728
Effective search space used: 876952728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 152 (63.2 bits)