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Os02g0602300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0201) R2 : 0.477
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.8 (0.0482) R2dC : 0.316 R2C : 0.279
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.488 (0.0423) R2dN8 : 0.197 R2N8 : 0.16
σ : 0.379
deviance : 65.7
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C
peak time of C : 1.21
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.02 0.294 11.2 -1.31 0.804 -0.79 0.415 2.02 0.122 1.22 27.26 1544 -- --
40.9 0.298 11.1 -1.03 0.802 -0.942 0.345 -- 0.225 1.32 22.49 3369 -- --
39.68 0.293 11.2 -1.32 0.809 -0.789 -- 1.99 0.118 1.26 27 1629 -- --
41.54 0.3 11.1 -1.1 0.792 -1.02 -- -- 0.197 1.26 22.5 3350 -- --
70.3 0.391 11.2 -1.41 -- -1.15 -- 2.32 0.117 -- 45.16 1032 -- --
54.36 0.346 11.1 -0.621 0.811 -- 0.413 -- 0.419 1.24 -- -- -- --
55.06 0.347 11.1 -0.635 0.811 -- -- -- 0.417 1.24 -- -- -- --
74.79 0.403 11.1 -0.929 -- -1.12 -- -- 0.244 -- 40.49 1019 -- --
60.86 0.365 11.1 -- 0.895 -0.553 -- -- 0.408 1.18 24.3 1510 -- --
95.71 0.457 11.1 -0.604 -- -- -- -- 0.433 -- -- -- -- --
65.7 0.379 11 -- 0.8 -- -- -- 0.488 1.21 -- -- -- --
92.82 0.449 11.1 -- -- -0.829 -- -- 0.337 -- 26.8 947 -- --
105.33 0.479 11 -- -- -- -- -- 0.5 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.58 radiation 20.0 14400 > th dose independent rect. 17 14
2 36.68 radiation 20.0 14400 > th dose independent rect. 6 1
15 36.87 radiation 40.0 43200 > th dose independent rect. 10 2
17 37.02 humidity 80.0 43200 > th dose dependent rect. 12 1
18 37.04 humidity 60.0 43200 < th dose dependent rect. 12 2
19 37.05 temperature 25.0 14400 < th dose independent rect. 10 2
24 37.08 temperature 25.0 14400 < th dose independent rect. 10 5
26 37.11 radiation 40.0 43200 < th dose independent rect. 10 1
29 37.14 temperature 25.0 14400 > th dose independent rect. 10 2
30 37.14 temperature 25.0 14400 > th dose independent rect. 10 5
41 37.26 radiation 20.0 43200 > th dose dependent rect. 10 1
42 37.26 radiation 20.0 14400 > th dose dependent rect. 17 14
47 37.29 humidity 80.0 43200 > th dose independent rect. 12 1
49 37.29 humidity 60.0 43200 < th dose dependent rect. 18 21
54 37.31 humidity 60.0 43200 < th dose dependent rect. 8 7
58 37.32 humidity 80.0 43200 < th dose dependent rect. 8 1
69 37.35 humidity 80.0 43200 > th dose dependent rect. 11 3
86 37.38 humidity 60.0 43200 < th dose independent rect. 8 2
95 37.39 humidity 50.0 43200 > th dose independent rect. 14 1
96 37.39 wind 7.0 43200 > th dose independent rect. 10 3
101 37.41 radiation 20.0 14400 > th dose dependent rect. 6 1
122 37.43 wind 7.0 43200 > th dose independent rect. 11 1
130 37.46 temperature 25.0 14400 > th dose independent rect. 13 1
141 37.48 wind 7.0 43200 < th dose independent rect. 10 3
149 37.49 humidity 50.0 43200 > th dose independent rect. 13 3
193 37.54 radiation 30.0 43200 < th dose independent rect. 23 8
194 37.54 humidity 60.0 43200 < th dose dependent sin 2 NA
198 37.55 wind 7.0 43200 < th dose independent rect. 11 1
216 37.57 humidity 60.0 43200 > th dose independent rect. 8 2
219 37.57 radiation 30.0 43200 < th dose independent rect. 21 10
237 37.59 humidity 50.0 43200 > th dose independent rect. 13 9
246 37.60 humidity 60.0 43200 < th dose dependent rect. 11 23
261 37.62 humidity 60.0 43200 < th dose dependent rect. 8 14
267 37.63 temperature 20.0 14400 < th dose independent rect. 21 1
280 37.64 humidity 60.0 43200 < th dose dependent rect. 11 11
349 37.66 humidity 60.0 43200 < th dose dependent no NA NA
374 37.67 radiation 30.0 43200 < th dose independent rect. 6 1
380 37.67 radiation 10.0 43200 < th dose independent rect. 17 13
400 37.68 radiation 30.0 43200 < th dose independent rect. 17 14
417 37.69 humidity 50.0 43200 > th dose independent sin 17 NA
425 37.69 wind 7.0 43200 > th dose dependent rect. 24 1
477 37.72 wind 7.0 43200 > th dose independent rect. 5 1
532 37.74 humidity 50.0 43200 < th dose independent rect. 14 1
564 37.76 humidity 60.0 43200 > th dose independent rect. 18 1
583 37.77 wind 9.0 43200 > th dose dependent rect. 18 2
592 37.78 humidity 50.0 43200 > th dose independent rect. 13 23
609 37.80 radiation 30.0 43200 < th dose independent sin 8 NA
610 37.80 wind 7.0 43200 > th dose independent rect. 24 1
611 37.80 humidity 60.0 43200 < th dose independent rect. 18 1
663 37.83 radiation 10.0 43200 < th dose independent rect. 2 4
677 37.83 wind 5.0 43200 > th dose dependent rect. 11 2
682 37.84 wind 7.0 43200 < th dose independent rect. 24 1
683 37.84 radiation 10.0 43200 < th dose independent rect. 5 1
704 37.85 wind 9.0 43200 > th dose independent rect. 18 2
727 37.86 wind 9.0 43200 < th dose independent rect. 18 1
739 37.86 humidity 50.0 43200 > th dose independent rect. 20 23
741 37.86 radiation 1.0 43200 < th dose dependent rect. 7 1
765 37.88 humidity 50.0 43200 > th dose independent no NA NA
767 37.88 temperature 20.0 14400 > th dose independent rect. 21 1
782 37.88 humidity 50.0 43200 > th dose independent rect. 21 20
800 37.88 humidity 50.0 43200 > th dose independent rect. 18 23
863 37.91 humidity 50.0 43200 < th dose independent rect. 11 6
887 37.92 precipitation 0.1 14400 > th dose independent rect. 5 3
888 37.92 precipitation 0.1 14400 < th dose independent rect. 5 3
892 37.92 precipitation 0.1 14400 < th dose dependent rect. 5 3
909 37.94 temperature 20.0 14400 < th dose independent rect. 20 5
942 37.96 radiation 1.0 43200 < th dose independent rect. 7 2
945 37.96 temperature 20.0 14400 < th dose independent rect. 19 7
952 37.97 humidity 70.0 43200 < th dose independent rect. 7 4
963 37.98 radiation 1.0 43200 > th dose independent rect. 7 2
965 37.98 humidity 50.0 43200 < th dose independent rect. 11 10
972 37.98 precipitation 0.1 14400 > th dose dependent rect. 5 3
993 37.99 humidity 50.0 43200 > th dose independent rect. 16 23