BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0602300 Os02g0602300|AK066929
         (177 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52200.2  | chr5:21202818-21204017 REVERSE LENGTH=212           74   4e-14

>AT5G52200.2 | chr5:21202818-21204017 REVERSE LENGTH=212
          Length = 211

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 16 RVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPK-RTIEESVDKSTHADAI 74
          RV+W+E N+ +IES KPVR+KITEPKTPYH M+D DDG++SP+ R  +E VD    A+ +
Sbjct: 28 RVQWDEANIVEIESNKPVRQKITEPKTPYHPMMD-DDGSLSPRGRAFDECVDDMQRAEEL 86

Query: 75 KTAL 78
          +  L
Sbjct: 87 RNVL 90



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.123    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,050,278
Number of extensions: 103701
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 108 (46.2 bits)