BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0602300 Os02g0602300|AK066929
         (177 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0602300  Similar to Myelin transcription factor 1 (MYT1...   263   5e-71
Os05g0301600  Protein phosphatase inhibitor 2 (IPP-2) family...   103   9e-23

>Os02g0602300 Similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid
           protein binding protein) (PLPB1)
          Length = 177

 Score =  263 bits (672), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 136/177 (76%)

Query: 1   MQAKESKKSRDRGRDRVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRT 60
           MQAKESKKSRDRGRDRVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRT
Sbjct: 1   MQAKESKKSRDRGRDRVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRT 60

Query: 61  IEESVDKSTHADAIKTALMEAVSSGKLSAREHLESCSNXXXXXXXXXXXXXXXXXXXXXX 120
           IEESVDKSTHADAIKTALMEAVSSGKLSAREHLESCSN                      
Sbjct: 61  IEESVDKSTHADAIKTALMEAVSSGKLSAREHLESCSNEEEEEEEEEEEEEEEEEEEEEE 120

Query: 121 XXXXXXXXXXXXXXXXXXXVAIKQGTDFEEQRKAHYDEFRKMKELRRRGTPSQEGDE 177
                              VAIKQGTDFEEQRKAHYDEFRKMKELRRRGTPSQEGDE
Sbjct: 121 QEEEEEEEEEEEEEEEEEEVAIKQGTDFEEQRKAHYDEFRKMKELRRRGTPSQEGDE 177



>Os05g0301600 Protein phosphatase inhibitor 2 (IPP-2) family protein
          Length = 165

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 82/155 (52%), Gaps = 30/155 (19%)

Query: 16  RVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRTIEESVDKSTHADAIK 75
           RVKWNE+NL +IES KPVR+KITEPKTPYH M+D DDG++SP R  ++ +D++ +A+AI 
Sbjct: 5   RVKWNEDNLYEIESNKPVRQKITEPKTPYHPMVD-DDGSLSPTRPFDKCLDETVNAEAIL 63

Query: 76  TALMEAVSSGKLSAREHLESCSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 135
           TAL    SS K   ++   + S+                                     
Sbjct: 64  TALNGVASSSKTDPKDDGWASSDDDADAMEQDDDPE------------------------ 99

Query: 136 XXXXVAIKQGTDFEEQRKAHYDEFRKMKELRRRGT 170
                A K    F+E R+AHYDEF K+KEL R G+
Sbjct: 100 -----AEKSRLSFKEHRRAHYDEFLKVKELMRSGS 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.123    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,680,949
Number of extensions: 155571
Number of successful extensions: 412
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 152 (63.2 bits)