BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0279400 Os05g0279400|AK102650
(853 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0279400 Zinc finger, RING-type domain containing protein 1554 0.0
Os01g0251200 Steroid nuclear receptor, ligand-binding domai... 649 0.0
Os01g0567800 100 6e-21
Os01g0568000 93 7e-19
Os07g0593500 92 2e-18
Os07g0632300 91 3e-18
Os01g0568200 87 5e-17
Os01g0567900 85 2e-16
Os01g0568700 85 3e-16
Os07g0632100 82 2e-15
Os01g0568100 78 3e-14
>Os05g0279400 Zinc finger, RING-type domain containing protein
Length = 853
Score = 1554 bits (4023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/853 (88%), Positives = 757/853 (88%)
Query: 1 MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD 60
MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD
Sbjct: 1 MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD 60
Query: 61 YTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCDKAEDQA 120
YTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCDKAEDQA
Sbjct: 61 YTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCDKAEDQA 120
Query: 121 GQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQHVKTG 180
GQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQHVKTG
Sbjct: 121 GQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQHVKTG 180
Query: 181 DSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN 240
DSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN
Sbjct: 181 DSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN 240
Query: 241 YDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQIPTS 300
YDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQIPTS
Sbjct: 241 YDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQIPTS 300
Query: 301 FIYXXXXXXXXXXXXXXXXXXXXXXXXXTPSMQNGSAIIGNGFPSRVDNVTXXXXXXXXX 360
FIY TPSMQNGSAIIGNGFPSRVDNVT
Sbjct: 301 FIYRRNEQDERRGRGRGRNSHRDGSDRDTPSMQNGSAIIGNGFPSRVDNVTGSVSVSSSS 360
Query: 361 XXXXXXXXXXXXRVFEHLSFPPLQDQDIPDARMDSAPDETSFPSLSEQQTRYAHALSQSS 420
RVFEHLSFPPLQDQDIPDARMDSAPDETSFPSLSEQQTRYAHALSQSS
Sbjct: 361 GRGESGQSSGNGRVFEHLSFPPLQDQDIPDARMDSAPDETSFPSLSEQQTRYAHALSQSS 420
Query: 421 LAAKLGDELLFPPLPGSSSNRGSTSTQQGLQSLAKNTLASRLQQRSKGSVKVLHSAXXXX 480
LAAKLGDELLFPPLPGSSSNRGSTSTQQGLQSLAKNTLASRLQQRSKGSVKVLHSA
Sbjct: 421 LAAKLGDELLFPPLPGSSSNRGSTSTQQGLQSLAKNTLASRLQQRSKGSVKVLHSARPRP 480
Query: 481 XXXXXXXXXXXXXXQMWPTPDQGLLHSSSSQLRIVRENGIMSSADSAWNPGGGASNRMKH 540
QMWPTPDQGLLHSSSSQLRIVRENGIMSSADSAWNPGGGASNRMKH
Sbjct: 481 SENPESVPPVSSSPQMWPTPDQGLLHSSSSQLRIVRENGIMSSADSAWNPGGGASNRMKH 540
Query: 541 SVSTPNLMSGGSSVQALSTSNGGNKKQQPPQSSQTLPAADDVRAANKTLVERMRSALGMD 600
SVSTPNLMSGGSSVQALSTSNGGNKKQQPPQSSQTLPAADDVRAANKTLVERMRSALGMD
Sbjct: 541 SVSTPNLMSGGSSVQALSTSNGGNKKQQPPQSSQTLPAADDVRAANKTLVERMRSALGMD 600
Query: 601 EDRYSAFKEIAGEYRQGIIGTSEYLSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTN 660
EDRYSAFKEIAGEYRQGIIGTSEYLSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTN
Sbjct: 601 EDRYSAFKEIAGEYRQGIIGTSEYLSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTN 660
Query: 661 IRFRSLQENSDGLTITSXXXXXXXXXXXXSHDVTETSAAPAKDMKDSLADSFLDTVRKLQ 720
IRFRSLQENSDGLTITS SHDVTETSAAPAKDMKDSLADSFLDTVRKLQ
Sbjct: 661 IRFRSLQENSDGLTITSKEGGRKKKGKGKSHDVTETSAAPAKDMKDSLADSFLDTVRKLQ 720
Query: 721 LNKTQEGEAEVLSRDGYRSSKGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDVXXXXX 780
LNKTQEGEAEVLSRDGYRSSKGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDV
Sbjct: 721 LNKTQEGEAEVLSRDGYRSSKGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDVGKGGG 780
Query: 781 XXXXXXXXXXXXXXXFLRARLGDNSLATLDLSRPTMSPERPERESQGPQVGLPMRGVWKN 840
FLRARLGDNSLATLDLSRPTMSPERPERESQGPQVGLPMRGVWKN
Sbjct: 781 SSNSNINKQSKKTSKFLRARLGDNSLATLDLSRPTMSPERPERESQGPQVGLPMRGVWKN 840
Query: 841 GGGQKLFTGNGRK 853
GGGQKLFTGNGRK
Sbjct: 841 GGGQKLFTGNGRK 853
>Os01g0251200 Steroid nuclear receptor, ligand-binding domain containing protein
Length = 737
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/755 (49%), Positives = 458/755 (60%), Gaps = 113/755 (14%)
Query: 1 MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD 60
MDD+CAVCA+ LEWVAYGAC HREVCSTCV RLRFV+ D CC+C T C +VFVTKAMGD
Sbjct: 63 MDDACAVCAEPLEWVAYGACAHREVCSTCVARLRFVLRDLRCCLCITPCPAVFVTKAMGD 122
Query: 61 YTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCD----KA 116
TKVI DF+ EGK GEYW+HE +Q +FDDA+ Y+MI AMCRLSCSVCD +
Sbjct: 123 RTKVIPDFSALRGAGGEGKAGEYWHHEATQTWFDDADQYRMISAMCRLSCSVCDSNKEEE 182
Query: 117 EDQAGQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQH 176
E++ G+AA+ +RKSK RS++QLKGHL +H LYMC LCLEGRKVFICEQKLYT +QLNQH
Sbjct: 183 EERTGKAAKAKRKSKIRSVDQLKGHLLDRHGLYMCDLCLEGRKVFICEQKLYTMSQLNQH 242
Query: 177 VKTGDSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYD 236
+K+GDSEVDGSEVER GF GHPMCEFC+S FYGDNELYTHM+REH+SCHICQRQH GQYD
Sbjct: 243 IKSGDSEVDGSEVERRGFGGHPMCEFCKSPFYGDNELYTHMTREHFSCHICQRQHSGQYD 302
Query: 237 YFRNYDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQ 296
YFRNYDDLE+HF++DHFLCED+ CL KKFVVF+SEAELKRHN +EHG M A
Sbjct: 303 YFRNYDDLEMHFQRDHFLCEDKGCLEKKFVVFESEAELKRHNGVEHGKHMPGA------- 355
Query: 297 IPTSFIYXXXXXXXXXXXXXXXXXXXXXXXXXTPSMQNGSAIIGNGFPSRVDN----VTX 352
+ SMQNG A +G+G + D+ +
Sbjct: 356 ----------------------------VDSSSSSMQNGIAAVGHGLGGQSDSSRVPLQS 387
Query: 353 XXXXXXXXXXXXXXXXXXXXRVFEHLSFPPLQDQDIPDARMDSAPDETSFPSLSEQQTRY 412
RV + PPL Q++ DAR+ S E SFPSL Q+R
Sbjct: 388 LSISSSSGQSSETRQSFARNRVLQQACVPPLSRQEVHDARVGSVLQEASFPSLPA-QSRK 446
Query: 413 AHALSQSS-LAAKLGDELLFPPLPGSSSNRGSTSTQQGLQSLAKNTLASRLQQRSKGSVK 471
A A SQSS AA++GD+ F PL +SNR QQG ++L +NT S L Q SK +
Sbjct: 447 APAHSQSSRTAARIGDQ-QFRPL-SVTSNRNVALAQQGTRTLPENTHVSGLAQYSK-RTE 503
Query: 472 VLHSAXXXXXXXXXXXXXXXXXXQMWPTPDQGLLHSSSSQLRIVRENGIMSSADSAWNPG 531
+H A Q + ++ N ++ S
Sbjct: 504 NMHQAV---------------------------------QPQFLKNNSLIPS-------- 522
Query: 532 GGASNRMKHSVSTPNLMSGGSSVQALSTSNGGNKKQQPPQSSQTLPAADDVRAANKTLVE 591
G+++R H S+ GN++Q +SQ L + +D+ AANK LVE
Sbjct: 523 -GSTSRPVH-----------------VPSSAGNERQDTFSNSQVLSSVEDILAANKALVE 564
Query: 592 RMRSALGMDEDRYSAFKEIAGEYRQGIIGTSEYLSYVEQFGLSHLVPEMARLLPDPQKQK 651
+MR+ALGMD+D ++AFKEIAGEYRQG+I +SEYLSYV+QFGL HLVPEMARLLPD QKQK
Sbjct: 565 KMRAALGMDQDMFNAFKEIAGEYRQGVINSSEYLSYVKQFGLLHLVPEMARLLPDAQKQK 624
Query: 652 ELADAYHTNIRFRSLQENSDGLTITSXXXXXXXXXXXXSHDVTETSAAPAKDMKDSLADS 711
ELADAY+ N+R SLQEN G T S D TS A D L D
Sbjct: 625 ELADAYYANLRLTSLQENGGGGTDNSKQGNQNKKGKGGVPDAIGTSNAAT----DPLKDK 680
Query: 712 FLDTVRKLQLNKT-QEGEAEVLSRDGYRSSKGKAQ 745
L+T K Q N QEG V ++G R++ G +Q
Sbjct: 681 LLNTAIKFQSNYMPQEGCCGVQRKEG-RTTDGSSQ 714
>Os01g0567800
Length = 227
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRFVMG-DKHCCICKTECSSVFVTKAMGDYT 62
SCAVC + LEW A G CGHR VCS C R+R D CCIC+T C V VTKA
Sbjct: 68 SCAVCTEPLEWAAVGPCGHRAVCSACAARVRSAPNPDNRCCICRTICPFVVVTKAAAG-- 125
Query: 63 KVINDFNIFPPVAT--EGKVGEYWYHEDSQAFFDDAEHYKMIRAM 105
+ F+ P VA+ +G+VGEYWY A+FDD + Y+ +A+
Sbjct: 126 --VVSFSTLPAVASHDDGRVGEYWYCAAVSAYFDDEQQYEAAKAV 168
>Os01g0568000
Length = 271
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKH-CCICKTECSSVFVTKAMGDYT 62
SCAVC + LEWVA G CGHR VC C R+R H CCIC+T C +V VTKA
Sbjct: 76 SCAVCMEPLEWVAVGPCGHRVVCPACAARVRSAPKPDHLCCICRTLCPTVLVTKAAAAAD 135
Query: 63 KVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHY 99
+ F+ P +G+VGEYWY A+FDD Y
Sbjct: 136 GELT-FSEMPAATQDGQVGEYWYCAAMSAYFDDERQY 171
>Os07g0593500
Length = 146
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 3 DSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMG-DY 61
+ CAVC + LEWVA G CGHR VC+ C+V++RFV D+ C +C+ C V V K +
Sbjct: 29 NCCAVCVEPLEWVAIGPCGHRCVCARCIVQVRFVSEDRRCHVCRAPCPLVVVIKGHCING 88
Query: 62 TKVINDFNIFPPVAT-EGKVGEYWYHEDSQAFFDDAEHYKMIRAMC 106
++ + P + T +G+V +W++ D+ A+F D + +K+ R C
Sbjct: 89 ADILAELPSSPSMITRQGRVDNFWFNVDTAAYFADEQQFKVARIAC 134
>Os07g0632300
Length = 253
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGDYTK 63
SCAVC + LEW A G CGH EVC+ C + +R ++ CCIC++ C V VT
Sbjct: 67 SCAVCMETLEWAAIGPCGHGEVCAGCALHIRVFQNNRLCCICRSPCRVVVVTNP---DAI 123
Query: 64 VINDFNIFPPVAT--------------EGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRL 108
+P V++ EG+VGEYWYH +AFFDD Y+ +A +L
Sbjct: 124 AAAGGGGWPAVSSRLPRSRTGGGYSQVEGRVGEYWYHAGMEAFFDDERQYEAAKAAAQL 182
>Os01g0568200
Length = 904
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKH-CCICKTECSSVFVTKAMGDYT 62
SC VC + +EWVA G CGHR VCS C RLR H CC+C+T CS+V +TKA
Sbjct: 703 SCVVCTEPIEWVAVGPCGHRVVCSPCAARLRSGPNPDHRCCVCRTLCSTVVITKAATAAH 762
Query: 63 KV--INDFNIFPPVATEGK---VGEYWYHEDSQAFFDDAEHYKMI 102
V +D + P A + VG YW A+FDD +HY +
Sbjct: 763 SVFTFSDQSSMPVAAAQDDGRPVGAYWCSAAMSAYFDDKKHYDQV 807
>Os01g0567900
Length = 277
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 5 CAVCADALEWVAYGACGHREVCSTCVVRLRFV-MGDKHCCICKTECSSVFVTKAMGDYTK 63
C VC + LEWVA G CGHR VCS C R+R D CC C+T C +VFVTKA
Sbjct: 75 CVVCMEPLEWVAVGPCGHRVVCSACAARVRSAPYSDHRCCTCRTPCPTVFVTKAAAAAAD 134
Query: 64 VINDFNIFPPV------ATEGKVGEYWYHEDSQAFFDDAEHYKMIRA 104
+ N + +G+VGEYWY A+FDD Y+ A
Sbjct: 135 --GELNYLLQLQGDAGSLQDGRVGEYWYLAPMSAYFDDERQYEAAAA 179
>Os01g0568700
Length = 306
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRF-VMGDKHCCICKTECSSVFVTKAMGDYT 62
SC VC + LEWVA G CGHR VCS CV R+R DK CIC+T C +V VTKA
Sbjct: 66 SCVVCTEPLEWVAVGPCGHRAVCSMCVARVRAGPDADKRSCICRTRCYTVAVTKAATAAD 125
Query: 63 KVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCR 107
+ P + + ++G++WY+ A+FDD HYK + R
Sbjct: 126 TLHAFPKTVPVTSRDWRIGKFWYYAAMSAYFDDRNHYKETKRAVR 170
>Os07g0632100
Length = 414
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 4 SCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGDYTK 63
SC VC + LEW A G CGH +VC+ C + +R ++ CCIC+ C V VT
Sbjct: 31 SCVVCMEPLEWAAIGPCGHGDVCAGCALHIRVFQNNRRCCICRAPCRVVVVTSHGAIVAA 90
Query: 64 VINDFNI------FPPVAT--------EGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLS 109
P T EG+VGEYWYH AFFDD Y +A RL
Sbjct: 91 AAAGGGWPAVSSRLPMSRTRRGGYSRREGRVGEYWYHTGMGAFFDDERQYAAAKAAARLG 150
Query: 110 CSVCDKAEDQ 119
C A +
Sbjct: 151 PPPCGDANEN 160
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 66/155 (42%), Gaps = 43/155 (27%)
Query: 5 CAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAM------ 58
CAVC + LEW A G CGH +VC+ C +R+R ++ CCIC+ C V VTK +
Sbjct: 225 CAVCTEPLEWAAIGPCGHGDVCAGCSLRIRVFQNNRRCCICRAPCRVVVVTKHVDAIAAA 284
Query: 59 ----------------------GDYTKVINDFNIFPPVATEGKVGE-YWYHEDSQAFFDD 95
G Y++V EG+VGE +WYH +AFFDD
Sbjct: 285 AGGGGGGWRAVSSRLPRSQTGGGGYSQV------------EGRVGEHWWYHAGMRAFFDD 332
Query: 96 AEHYKMIRAMCRLSCSVCDKAEDQAGQAAQVRRKS 130
Y A R C K D + Q R S
Sbjct: 333 ERQYAAATAAARP--PSCGKESDDDHRPPQARSTS 365
>Os01g0568100
Length = 253
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 5 CAVCADALEWVAYGACGHREVCSTCVVRLRFVMG---DKHCCICKTECSSVFVTK----A 57
CAVC + LEWVA G CGH VCS C R+R D CCIC+ C V VT+ A
Sbjct: 74 CAVCMEPLEWVAVGPCGHAGVCSVCAARIRSSRSWQPDLRCCICRAHCPFVVVTRAAAAA 133
Query: 58 MGDYTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCR 107
+N + + G YWY A+FDD E Y+ RA+ R
Sbjct: 134 APAAMPAVNSYQEWR------ARGYYWYCTTMLAYFDDVEQYRATRAIAR 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,889,820
Number of extensions: 1104509
Number of successful extensions: 3079
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 3057
Number of HSP's successfully gapped: 14
Length of query: 853
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 744
Effective length of database: 11,344,475
Effective search space: 8440289400
Effective search space used: 8440289400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)