Os05g0279400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0279400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.82 | 0.162 | 11.6 | 0.807 | 0.332 | 0.453 | 0.125 | 0.232 | 0.213 | 9.12 | 80.01 | 1257 | -- | -- |
| 11.87 | 0.16 | 11.6 | 0.826 | 0.334 | 0.465 | 0.142 | -- | 0.218 | 9.15 | 80.1 | 1263 | -- | -- |
| 11.86 | 0.16 | 11.6 | 0.808 | 0.325 | 0.453 | -- | 0.275 | 0.212 | 9.01 | 80.09 | 1235 | -- | -- |
| 11.94 | 0.161 | 11.6 | 0.83 | 0.332 | 0.469 | -- | -- | 0.218 | 9.05 | 80.04 | 1257 | -- | -- |
| 13.25 | 0.17 | 11.6 | 0.825 | -- | 0.546 | -- | 0.253 | 0.21 | -- | 79.62 | 879 | -- | -- |
| 14.8 | 0.18 | 11.6 | 0.813 | 0.36 | -- | 0.208 | -- | 0.188 | 9.81 | -- | -- | -- | -- |
| 14.96 | 0.181 | 11.6 | 0.821 | 0.36 | -- | -- | -- | 0.188 | 9.7 | -- | -- | -- | -- |
| 13.1 | 0.169 | 11.6 | 0.855 | -- | 0.568 | -- | -- | 0.205 | -- | 78.76 | 889 | -- | -- |
| 29.11 | 0.251 | 11.6 | -- | 0.314 | 0.456 | -- | -- | 0.153 | 8.95 | 82 | 2571 | -- | -- |
| 22.65 | 0.222 | 11.6 | 0.818 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 32.72 | 0.268 | 11.6 | -- | 0.358 | -- | -- | -- | 0.097 | 9.53 | -- | -- | -- | -- |
| 31.1 | 0.26 | 11.6 | -- | -- | 0.518 | -- | -- | 0.123 | -- | 82 | 844 | -- | -- |
| 40.28 | 0.296 | 11.6 | -- | -- | -- | -- | -- | 0.0982 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.61 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 7 | 11.71 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 37 | 11.86 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 11 |
| 39 | 11.86 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 19 |
| 44 | 11.87 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 16 |
| 47 | 11.87 | humidity | 60 | 720 | > th | dose dependent | sin | 15 | NA |
| 49 | 11.87 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 92 | 11.93 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 21 |
| 98 | 11.94 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 18 |
| 105 | 11.95 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 131 | 11.97 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 21 |
| 154 | 11.98 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 160 | 11.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 163 | 11.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 171 | 12.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 199 | 12.02 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 205 | 12.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 239 | 12.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 240 | 12.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 257 | 12.05 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 258 | 12.05 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 262 | 12.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 326 | 12.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 332 | 12.08 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 389 | 12.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 395 | 12.09 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 23 |
| 412 | 12.10 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 414 | 12.10 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |
| 447 | 12.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 450 | 12.10 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 483 | 12.11 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 523 | 12.13 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 617 | 12.15 | humidity | 70 | 1440 | > th | dose dependent | sin | 21 | NA |
| 737 | 12.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 10 |
| 855 | 12.21 | humidity | 70 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 883 | 12.22 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |