BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0279400 Os05g0279400|AK102650
(853 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62240.1 | chr3:23033592-23036653 REVERSE LENGTH=813 536 e-152
AT2G47090.1 | chr2:19341444-19344297 REVERSE LENGTH=767 491 e-139
>AT3G62240.1 | chr3:23033592-23036653 REVERSE LENGTH=813
Length = 812
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 225/303 (74%), Positives = 265/303 (87%)
Query: 1 MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD 60
MDDSCAVCAD LEWVAYG+CGHREVCSTCVVRLRFV+ D CCICKTE VFVTKA+GD
Sbjct: 1 MDDSCAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICKTESPIVFVTKALGD 60
Query: 61 YTKVINDFNIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCDKAEDQA 120
YT+ INDF+ FP EG+VG +WYHED+QAFFDD + Y+MI+AMCRLSC VCDK ED+
Sbjct: 61 YTRTINDFSTFPSAPREGRVGAFWYHEDTQAFFDDLDQYRMIKAMCRLSCGVCDKTEDKP 120
Query: 121 GQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQHVKTG 180
+ + + +S+EQLKGHL+H+H+L+MC LCLEGRK+FICEQKLYTR QLNQH++TG
Sbjct: 121 REGGPRHHRQRIKSVEQLKGHLYHKHKLHMCGLCLEGRKIFICEQKLYTRAQLNQHIQTG 180
Query: 181 DSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRN 240
DSEVDGSE ER GFAGHPMCEFCR+ FYGDNELYTHMS EHY+CH+CQR PGQY+Y++N
Sbjct: 181 DSEVDGSESERGGFAGHPMCEFCRNPFYGDNELYTHMSTEHYTCHLCQRSQPGQYEYYKN 240
Query: 241 YDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQIPTS 300
YDDLE+HFR+DHFLCED++CLAKKF VFQ+E+ELKRHNA+EHGG+MSR+QR+AALQIPTS
Sbjct: 241 YDDLEIHFRRDHFLCEDDSCLAKKFTVFQNESELKRHNAIEHGGKMSRSQRSAALQIPTS 300
Query: 301 FIY 303
F Y
Sbjct: 301 FRY 303
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 159/494 (32%), Positives = 222/494 (44%), Gaps = 119/494 (24%)
Query: 407 EQQTRYAHAL-SQSSLAAKLGDELLFPPLPGSSSNRGSTSTQQGLQSLAKNTLASRLQQR 465
E +RY A+ S ++LG E FPPL G S + Q ++SL NT+A+RL+++
Sbjct: 386 EPSSRYLQAVGSFGGGGSRLG-ESAFPPLSGQQS------SGQNVESLPTNTMAARLRRQ 438
Query: 466 SKGSVKVLHSAXXXXXXXXXXXXXXXXXXQMWPT----PDQGLL-----HSSSSQLRIVR 516
+ Q WP P Q + HSSS I R
Sbjct: 439 TN---------------RTSTASAIASPSQGWPVINRGPGQASITSGGNHSSSGWPAIGR 483
Query: 517 ENGIMSSAD----------------SAWNPGGGASNRMKHSVSTPNL------MSGGSSV 554
SS+ SA +NR+ HS S PNL S
Sbjct: 484 TPVQASSSSVQSRSHNRVSQPRPLASAVPQAARNANRIPHSSSAPNLSDTRSLQPSHSDF 543
Query: 555 QALSTSNGGNKKQ-----------QPPQSSQTLPAADDVRAANKTLVERMRSALGMDEDR 603
+S++ N+K QPP DV++ANK+L+E+MRSALG DED
Sbjct: 544 PPVSSAVVQNRKTSSTTTQGSSNTQPPP---------DVQSANKSLIEKMRSALGHDEDV 594
Query: 604 YSAFKEIAGEYRQGIIGTSEYLSYVEQFGLSHLVPEMARLLPDPQKQKELADAYHTNIRF 663
+ AF+ I+G+YRQG I YL YV+ +GLSHLV ++ARL PDP++QKEL D ++ ++R
Sbjct: 595 FVAFRNISGQYRQGSIDAKTYLEYVQGYGLSHLVIDLARLCPDPKRQKELIDTHNASLRE 654
Query: 664 RSLQENSDGLTITSXXXXXXXXXXXXSHDVTETSAAPAKDMKDSLADSFLDTVRKLQLNK 723
++N S S + A D K++LAD+F+DTVR+LQ ++
Sbjct: 655 EDSKDNG-----RSAAQSSSQPKESQSSKKNKGKAVKVVDPKETLADNFMDTVRRLQSSQ 709
Query: 724 T-QEGEAEVLSRDG--YRSSKGKAQLITGGSSSSTPCLDGDHGAISMASCAKDDVXXXXX 780
QE E E +S+D YRS KGK+Q++ G SSST
Sbjct: 710 NPQEEEEEAISKDKNTYRSDKGKSQVV-GTDSSST------------------------- 743
Query: 781 XXXXXXXXXXXXXXXFLRARLGDNSLAT-LDLSRPTMSPERPERES-----QGPQVGLPM 834
F R RLGD S+A LDL+ T E+ ++S Q GLP+
Sbjct: 744 ----GSKQQRKKTSKFHRVRLGDGSMAALLDLNNSTRESEQESKDSNSNSNQNQTGGLPV 799
Query: 835 RGVWKNGGGQKLFT 848
RGVW+ GG LF+
Sbjct: 800 RGVWRKGGA-NLFS 812
>AT2G47090.1 | chr2:19341444-19344297 REVERSE LENGTH=767
Length = 766
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 252/304 (82%), Gaps = 2/304 (0%)
Query: 1 MDDSCAVCADALEWVAYGACGHREVCSTCVVRLRFVMGDKHCCICKTECSSVFVTKAMGD 60
MDDSCAVCA+ LEWV YG+CGHREVCSTCVVRLRF++ D+ CCICKTEC VFVTKA+GD
Sbjct: 1 MDDSCAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICKTECPVVFVTKALGD 60
Query: 61 YTKVINDFNI-FPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIRAMCRLSCSVCDKAEDQ 119
YTK I+DF+ FP V EG+VG +WYHE++ +FDD HY I+AMCRLSC++C+ ++
Sbjct: 61 YTKTISDFSTTFPSVPKEGRVGSFWYHEETNVYFDDLNHYTRIKAMCRLSCNLCNDT-NK 119
Query: 120 AGQAAQVRRKSKFRSIEQLKGHLFHQHRLYMCSLCLEGRKVFICEQKLYTRTQLNQHVKT 179
+ +F+S+E LK HL HQH+L+MCSLCL GRKVFICEQKL+T+ QLNQH+ +
Sbjct: 120 TRPKKEPNHCVRFKSVEHLKDHLNHQHKLHMCSLCLVGRKVFICEQKLFTKGQLNQHISS 179
Query: 180 GDSEVDGSEVERSGFAGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFR 239
GDSEVDGSE ER GF GHPMCEFC+ FYGDNELYTHMSREHY+CHICQR PGQY+Y+
Sbjct: 180 GDSEVDGSESERGGFTGHPMCEFCKRPFYGDNELYTHMSREHYTCHICQRLKPGQYEYYG 239
Query: 240 NYDDLELHFRKDHFLCEDEACLAKKFVVFQSEAELKRHNAMEHGGRMSRAQRNAALQIPT 299
NYDDLE+HFR DHFLCEDE CLAKKF+VFQ EAELKRHNA++HGGRMSR+Q+NA+LQI
Sbjct: 240 NYDDLEVHFRSDHFLCEDETCLAKKFIVFQIEAELKRHNAIDHGGRMSRSQQNASLQIQA 299
Query: 300 SFIY 303
SF Y
Sbjct: 300 SFQY 303
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 130/282 (46%), Gaps = 64/282 (22%)
Query: 574 QTLPAADDVRAANKTLVERMRSALGMDEDRYSAFKEIAGEYRQGIIGTSEYLSYVEQFGL 633
Q DV++ NK+LVE++ ++LG DE+ + AFK +G+YR G I YL YV+ +GL
Sbjct: 542 QVAQGVSDVQSDNKSLVEKIHASLGHDEELFMAFKNTSGKYRHGSIDARTYLEYVKGYGL 601
Query: 634 SHLVPEMARLLPDPQKQKELADAYHTNIRFRSLQENSDGLTITSXXXXXXXXXXXXSHDV 693
SHLV +MARL PDPQ+QKEL D ++ L+ + G
Sbjct: 602 SHLVLDMARLCPDPQRQKELIDTHNA-----CLKGGNKG--------------------- 635
Query: 694 TETSAAPAKDMKDSLADSFLDTVRKLQLNKTQEGEAEVLSRDGYRSSKGKAQLITGGSSS 753
A + DS D F+DTVRKLQ + + + + YRS KGK ++ T +SS
Sbjct: 636 ---KAVKVESSSDSKGDRFVDTVRKLQFSDKSQDKDKDKD--AYRSDKGKTKVTTLVNSS 690
Query: 754 STPCLDGDHGAISMASCAKDDVXXXXXXXXXXXXXXXXXXXXFLRARLGDNSL-ATLDLS 812
S GD G FLR RLG+ S+ A LDL
Sbjct: 691 SAGVGLGDTG------------------------KQPKKTSKFLRTRLGEKSMAAVLDLR 726
Query: 813 RPTMSPERPE------RESQGPQVGLPMRGVWKNGGGQKLFT 848
PE PE + SQ GLP+RG WK G KLF
Sbjct: 727 NSNPEPE-PEPKNDNSKRSQNSPGGLPLRGAWKRGSA-KLFV 766
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,181,441
Number of extensions: 676643
Number of successful extensions: 1972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 5
Length of query: 853
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 746
Effective length of database: 8,173,057
Effective search space: 6097100522
Effective search space used: 6097100522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)