BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0272200 Os05g0272200|J100085C10
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0272200 Conserved hypothetical protein 452 e-128
Os05g0272800 Conserved hypothetical protein 414 e-116
>Os05g0272200 Conserved hypothetical protein
Length = 216
Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 CQVPESPNFKVRVNLEVKQGGGPSSQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIIN 60
CQVPESPNFKVRVNLEVKQGGGPSSQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIIN
Sbjct: 1 CQVPESPNFKVRVNLEVKQGGGPSSQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIIN 60
Query: 61 PETPSWCTPGKVGLCPPWHTFRNGTRVHRTDAARFPYAAYHMYCSPGNARAAEQPTTPCD 120
PETPSWCTPGKVGLCPPWHTFRNGTRVHRTDAARFPYAAYHMYCSPGNARAAEQPTTPCD
Sbjct: 61 PETPSWCTPGKVGLCPPWHTFRNGTRVHRTDAARFPYAAYHMYCSPGNARAAEQPTTPCD 120
Query: 121 PYSNPQPQEIMQLVPHPVWGEFGYPTAKGQGWIGDPRAWELDVGAMSQALYFYQDPGTPP 180
PYSNPQPQEIMQLVPHPVWGEFGYPTAKGQGWIGDPRAWELDVGAMSQALYFYQDPGTPP
Sbjct: 121 PYSNPQPQEIMQLVPHPVWGEFGYPTAKGQGWIGDPRAWELDVGAMSQALYFYQDPGTPP 180
Query: 181 AKRRWSSLDVGTEIYVSNHAEAEWTLSGFDILVPKE 216
AKRRWSSLDVGTEIYVSNHAEAEWTLSGFDILVPKE
Sbjct: 181 AKRRWSSLDVGTEIYVSNHAEAEWTLSGFDILVPKE 216
>Os05g0272800 Conserved hypothetical protein
Length = 519
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/215 (90%), Positives = 205/215 (95%)
Query: 2 QVPESPNFKVRVNLEVKQGGGPSSQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIINP 61
VPESPNFKVRV LEVKQGGGP+SQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIINP
Sbjct: 291 MVPESPNFKVRVTLEVKQGGGPNSQFYLMDMGSCWKNDGRPCDGDTATDVTRYSEMIINP 350
Query: 62 ETPSWCTPGKVGLCPPWHTFRNGTRVHRTDAARFPYAAYHMYCSPGNARAAEQPTTPCDP 121
ETPSWCT ++ CPPWHTFRNGTRVHRTDAARFPYAAYH+YCSPGNARAAE+PTT CD
Sbjct: 351 ETPSWCTRRRIEECPPWHTFRNGTRVHRTDAARFPYAAYHVYCSPGNARAAEEPTTYCDA 410
Query: 122 YSNPQPQEIMQLVPHPVWGEFGYPTAKGQGWIGDPRAWELDVGAMSQALYFYQDPGTPPA 181
YSNPQPQEI+QLVPHPVWGEFGYPTAKGQGWIGDPR WELDVGA+SQALYFYQDPGTPPA
Sbjct: 411 YSNPQPQEILQLVPHPVWGEFGYPTAKGQGWIGDPRTWELDVGALSQALYFYQDPGTPPA 470
Query: 182 KRRWSSLDVGTEIYVSNHAEAEWTLSGFDILVPKE 216
KRRWSSLDVGTEIYVS +AEAEWTLSGFDI+VP+E
Sbjct: 471 KRRWSSLDVGTEIYVSKYAEAEWTLSGFDIVVPEE 505
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,036,223
Number of extensions: 492627
Number of successful extensions: 1067
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)