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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0272800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0387) R2 : 0.438
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.58 (0.0916) R2dC : 0.373 R2C : 0.375
β3 : -1.04 (0.146) R2dE : 0.0647 R2E : 0.0626
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0754 (0.0826) R2dN8 : 0.0014 R2N8 : -0.00366
σ : 0.722
deviance : 240.51
__
_____
C
peak time of C : 23.6
E
wheather : atmosphere
threshold : 1001
memory length : 11261
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.67 0.703 5.26 -0.806 1.61 -0.715 -0.106 -3.25 -0.133 23.6 1005 5554 -- --
230.32 0.707 5.24 -0.635 1.6 -0.978 -0.12 -- -0.153 23.6 1003 10990 -- --
223.71 0.697 5.26 -0.805 1.61 -0.716 -- -3.24 -0.134 23.6 1005 5584 -- --
230.36 0.707 5.24 -0.642 1.6 -0.967 -- -- -0.162 23.6 1003 10998 -- --
385.94 0.915 5.22 -0.76 -- -0.858 -- -2.73 -0.129 -- 1006 5656 -- --
250.1 0.741 5.22 -0.808 1.61 -- -0.14 -- -0.0502 23.6 -- -- -- --
250.18 0.741 5.22 -0.802 1.61 -- -- -- -0.0497 23.6 -- -- -- --
390.52 0.92 5.21 -0.583 -- -0.987 -- -- -0.147 -- 1003 11565 -- --
240.51 0.722 5.22 -- 1.58 -1.04 -- -- -0.0754 23.6 1001 11261 -- --
412.67 0.949 5.18 -0.757 -- -- -- -- -0.0314 -- -- -- -- --
267.13 0.765 5.2 -- 1.6 -- -- -- 0.0396 23.6 -- -- -- --
399.11 0.93 5.19 -- -- -1.09 -- -- -0.0934 -- 1003 11610 -- --
427.8 0.965 5.16 -- -- -- -- -- 0.0526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.72 humidity 80.0 90 < th dose independent rect. 21 19
11 213.77 humidity 90.0 90 < th dose dependent rect. 20 20
39 216.77 temperature 20.0 270 > th dose independent rect. 15 16
48 217.45 atmosphere 1000.0 30 > th dose independent rect. 4 16
86 219.30 radiation 10.0 30 < th dose dependent rect. 4 16
91 219.45 temperature 20.0 90 > th dose independent rect. 3 17
109 219.94 humidity 70.0 270 > th dose dependent sin 7 NA
110 219.95 humidity 60.0 90 > th dose dependent rect. 3 12
113 220.09 temperature 20.0 270 > th dose independent rect. 1 8
144 220.88 humidity 80.0 270 > th dose independent rect. 1 14
146 220.90 humidity 90.0 270 < th dose independent sin 5 NA
147 220.90 temperature 20.0 90 > th dose independent rect. 3 6
156 221.03 humidity 60.0 90 > th dose dependent rect. 3 8
157 221.03 humidity 70.0 270 > th dose dependent rect. 1 13
168 221.20 atmosphere 995.0 30 > th dose dependent rect. 20 8
170 221.22 humidity 50.0 90 > th dose dependent rect. 3 17
173 221.28 humidity 60.0 90 > th dose dependent sin 4 NA
178 221.39 humidity 60.0 90 > th dose dependent rect. 3 14
197 221.60 humidity 80.0 90 > th dose independent rect. 3 12
199 221.64 humidity 70.0 270 > th dose dependent rect. 23 11
204 221.75 humidity 90.0 90 < th dose independent rect. 20 8
205 221.75 radiation 30.0 90 < th dose dependent rect. 3 17
213 221.84 humidity 80.0 270 > th dose dependent rect. 23 21
216 221.88 humidity 80.0 270 > th dose independent rect. 1 9
227 221.97 humidity 70.0 270 > th dose dependent rect. 1 9
244 222.15 humidity 80.0 270 > th dose dependent rect. 23 18
258 222.31 humidity 80.0 90 > th dose independent rect. 3 14
267 222.34 radiation 1.0 30 < th dose independent rect. 4 16
304 222.61 humidity 80.0 270 > th dose independent sin 6 NA
375 223.22 temperature 15.0 90 > th dose independent rect. 20 7
382 223.24 radiation 20.0 90 < th dose independent rect. 3 17
383 223.24 atmosphere 1005.0 4320 < th dose dependent rect. 4 1
384 223.25 precipitation 0.1 30 < th dose independent rect. 20 8
385 223.25 precipitation 0.1 30 < th dose dependent rect. 20 8
393 223.33 wind 5.0 4320 > th dose dependent rect. 17 10
408 223.50 radiation 10.0 10 < th dose dependent rect. 7 13
413 223.53 atmosphere 1005.0 4320 < th dose dependent rect. 4 3
419 223.56 humidity 90.0 270 < th dose dependent sin 8 NA
428 223.61 temperature 30.0 90 < th dose independent rect. 20 7
430 223.61 humidity 50.0 90 > th dose independent rect. 20 7
433 223.61 atmosphere 995.0 90 > th dose independent rect. 20 7
434 223.61 radiation 1.0 90 < th dose independent rect. 20 7
439 223.61 humidity 80.0 90 > th dose independent rect. 3 16
441 223.61 atmosphere 1015.0 90 < th dose independent rect. 3 17
443 223.61 radiation 1.0 90 < th dose dependent rect. 20 7
448 223.62 wind 9.0 90 < th dose independent rect. 20 7
451 223.64 wind 5.0 4320 > th dose independent rect. 20 2
482 223.78 humidity 80.0 90 > th dose independent rect. 3 8
484 223.78 wind 5.0 4320 > th dose dependent rect. 20 3
493 223.82 humidity 80.0 90 < th dose independent rect. 9 7
506 223.91 atmosphere 995.0 30 > th dose dependent rect. 4 16
516 223.97 wind 3.0 4320 > th dose dependent rect. 20 1
536 224.05 humidity 60.0 90 > th dose dependent rect. 3 6
539 224.08 temperature 15.0 90 > th dose dependent rect. 3 6
560 224.21 wind 9.0 30 < th dose independent rect. 4 16
585 224.24 wind 5.0 4320 < th dose independent rect. 20 1
590 224.25 atmosphere 1005.0 30 > th dose independent rect. 20 8
609 224.33 atmosphere 1005.0 14400 > th dose independent rect. 4 1
679 224.60 temperature 20.0 270 > th dose independent rect. 1 19
717 224.75 atmosphere 1005.0 4320 < th dose dependent sin 6 NA
721 224.76 temperature 10.0 90 > th dose dependent rect. 20 7
739 224.82 humidity 50.0 30 > th dose independent rect. 4 16
741 224.83 radiation 20.0 30 < th dose dependent rect. 13 7
776 224.91 radiation 40.0 90 < th dose dependent rect. 15 18
801 224.94 humidity 90.0 90 < th dose dependent sin 5 NA
826 225.03 humidity 90.0 270 > th dose independent rect. 23 21
841 225.06 atmosphere 1005.0 14400 < th dose independent rect. 4 1
844 225.06 radiation 1.0 14400 < th dose dependent rect. 23 5
848 225.07 atmosphere 1005.0 4320 < th dose independent rect. 6 5
852 225.08 wind 7.0 4320 < th dose independent rect. 16 10
867 225.11 atmosphere 1000.0 4320 > th dose independent rect. 5 4
881 225.15 atmosphere 1000.0 4320 > th dose independent rect. 6 1
911 225.19 atmosphere 1000.0 4320 < th dose independent rect. 6 1
926 225.21 precipitation 0.1 30 < th dose independent rect. 4 16
930 225.21 precipitation 0.1 30 < th dose dependent rect. 4 16
933 225.21 radiation 30.0 90 < th dose dependent rect. 13 20
948 225.24 wind 7.0 4320 > th dose independent rect. 17 10
953 225.25 radiation 10.0 10 < th dose dependent sin 23 NA
989 225.32 atmosphere 1000.0 4320 < th dose dependent rect. 11 3