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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0272200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0498) R2 : 0.313
β1 : -1.23 (0.181) R2dD : 0.071 R2D : 0.0214
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.25 (0.147) R2dE : 0.123 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.777 (0.11) R2dN8 : 0.111 R2N8 : 0.114
σ : 0.925
deviance : 390.79
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.82
memory length : 5
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 18.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
386.13 0.923 4.36 -1.35 0.273 1.26 -0.665 0.935 -0.829 5.85 25 8 17.8 --
388.08 0.925 4.35 -1.23 0.256 1.27 -0.602 -- -0.795 5.04 24.87 6 17.9 --
386.25 0.922 4.36 -1.36 0.29 1.26 -- 0.843 -0.83 5.39 24.87 5 17.7 --
388.99 0.925 4.35 -1.23 0.256 1.25 -- -- -0.795 5.28 24.9 5 17.9 --
388.62 0.923 4.36 -1.35 -- 1.27 -- 0.744 -0.806 -- 24.9 5 18.5 --
441.38 0.985 4.4 -1.35 0.502 -- -0.226 -- -1.07 7.82 -- -- -- --
441.53 0.984 4.4 -1.36 0.501 -- -- -- -1.06 7.89 -- -- -- --
390.79 0.925 4.35 -1.23 -- 1.25 -- -- -0.777 -- 24.82 5 18.8 --
422.45 0.957 4.31 -- 0.231 1.4 -- -- -0.615 4.99 25.47 13 17.5 --
455.19 0.997 4.41 -1.35 -- -- -- -- -1.06 -- -- -- -- --
490.08 1.04 4.37 -- 0.493 -- -- -- -0.914 8.08 -- -- -- --
424.73 0.96 4.31 -- -- 1.38 -- -- -0.625 -- 25.4 13 18.2 --
503.39 1.05 4.38 -- -- -- -- -- -0.908 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.59 temperature 25 90 > th dose independent rect. 1 16
2 386.17 temperature 25 270 > th dose independent rect. 23 16
4 386.47 temperature 25 10 < th dose independent sin 0 NA
7 387.49 temperature 25 90 < th dose independent sin 1 NA
13 388.37 temperature 25 270 < th dose independent sin 4 NA
18 388.79 temperature 25 90 > th dose independent sin 0 NA
22 388.91 temperature 25 30 > th dose independent rect. 4 14
31 389.47 temperature 25 270 < th dose independent rect. 1 11
32 389.49 temperature 25 270 < th dose independent rect. 23 13
33 389.55 humidity 90 14400 < th dose dependent rect. 1 1
34 389.62 temperature 25 10 > th dose independent sin 0 NA
36 389.70 temperature 25 90 > th dose independent rect. 6 11
47 390.36 temperature 25 90 > th dose independent rect. 9 8
54 390.71 temperature 25 270 > th dose independent sin 4 NA
63 391.04 humidity 90 14400 < th dose dependent rect. 24 4
70 391.32 temperature 25 270 < th dose dependent sin 0 NA
82 391.76 temperature 25 10 > th dose independent rect. 7 11
83 391.76 temperature 25 270 < th dose dependent rect. 6 8
85 391.80 temperature 25 10 < th dose independent rect. 4 10
119 392.84 temperature 25 10 < th dose independent rect. 4 14
127 392.99 temperature 25 270 < th dose independent rect. 3 9
129 393.07 temperature 25 10 < th dose independent rect. 4 16
132 393.09 temperature 25 270 < th dose dependent rect. 6 13
141 393.28 temperature 25 10 < th dose independent rect. 4 18
155 393.62 humidity 50 14400 > th dose dependent rect. 4 2
166 393.88 humidity 50 14400 > th dose dependent rect. 1 6
176 393.98 temperature 25 270 > th dose independent rect. 20 20
182 394.07 temperature 25 90 < th dose independent rect. 9 4
191 394.23 temperature 25 90 > th dose independent rect. 20 22
213 394.44 temperature 25 90 < th dose independent rect. 7 6
226 394.61 temperature 25 270 < th dose independent rect. 24 21
235 394.74 humidity 50 14400 > th dose dependent rect. 1 2
262 395.09 temperature 25 270 < th dose dependent rect. 9 1
312 395.64 wind 1 43200 < th dose dependent rect. 22 1
338 395.94 radiation 20 43200 > th dose dependent rect. 15 1
369 396.08 temperature 25 90 < th dose independent rect. 7 12
374 396.12 wind 1 14400 < th dose dependent rect. 22 6
390 396.27 wind 9 14400 < th dose independent rect. 12 1
423 396.61 temperature 20 270 > th dose dependent rect. 5 10
424 396.62 temperature 20 270 > th dose dependent sin 5 NA
465 396.81 temperature 20 270 > th dose dependent rect. 19 20
467 396.84 wind 1 43200 < th dose independent rect. 22 1
469 396.85 temperature 25 90 < th dose independent rect. 7 14
502 397.15 radiation 10 43200 < th dose dependent rect. 6 1
508 397.22 wind 1 43200 > th dose independent rect. 21 2
542 397.29 wind 1 43200 < th dose dependent rect. 18 9
543 397.30 radiation 10 43200 < th dose dependent rect. 16 19
551 397.40 radiation 40 43200 > th dose independent rect. 13 19
559 397.45 radiation 10 43200 > th dose independent rect. 16 15
579 397.50 radiation 40 43200 > th dose independent rect. 13 3
599 397.52 temperature 25 10 < th dose independent rect. 8 6
619 397.70 wind 9 14400 > th dose independent rect. 12 1
627 397.75 radiation 40 43200 < th dose dependent rect. 15 2
631 397.79 radiation 10 43200 < th dose dependent sin 11 NA
638 397.85 radiation 20 43200 < th dose independent rect. 15 1
668 397.92 radiation 20 43200 > th dose independent rect. 15 2
698 397.97 radiation 40 43200 < th dose dependent rect. 15 8
699 397.97 radiation 40 43200 < th dose dependent rect. 15 16
701 397.98 radiation 40 43200 < th dose dependent rect. 15 6
734 398.02 temperature 25 90 < th dose independent rect. 9 10
811 398.20 temperature 25 720 < th dose dependent rect. 24 11
823 398.25 temperature 25 90 < th dose independent rect. 9 12
840 398.33 humidity 80 14400 > th dose independent rect. 21 10
869 398.46 wind 1 43200 < th dose independent rect. 21 6
897 398.57 temperature 25 10 > th dose independent rect. 7 9
907 398.59 radiation 30 43200 > th dose independent sin 14 NA
918 398.62 radiation 30 43200 < th dose independent rect. 14 8
921 398.62 radiation 30 43200 < th dose independent rect. 14 16
931 398.63 radiation 30 43200 < th dose independent rect. 14 14
957 398.67 humidity 80 43200 > th dose independent rect. 19 1
995 398.77 wind 1 43200 < th dose independent rect. 18 9