BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0269500 Os05g0269500|AK072871
(722 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0269500 Conserved hypothetical protein 1310 0.0
Os09g0525700 Conserved hypothetical protein 377 e-104
>Os05g0269500 Conserved hypothetical protein
Length = 722
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/722 (90%), Positives = 653/722 (90%)
Query: 1 MPRRRGTPLPTILLLLAFVGGACGTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPS 60
MPRRRGTPLPTILLLLAFVGGACGTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPS
Sbjct: 1 MPRRRGTPLPTILLLLAFVGGACGTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPS 60
Query: 61 GASGGEASLVARVAGVEEENDTPSATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPD 120
GASGGEASLVARVAGVEEENDTPSATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPD
Sbjct: 61 GASGGEASLVARVAGVEEENDTPSATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPD 120
Query: 121 EKYVKTHKCEPYAGAKVVGECERLWDEKGNVIKQTEPICCPCGPHRVQSKCGDIWSKLTK 180
EKYVKTHKCEPYAGAKVVGECERLWDEKGNVIKQTEPICCPCGPHRVQSKCGDIWSKLTK
Sbjct: 121 EKYVKTHKCEPYAGAKVVGECERLWDEKGNVIKQTEPICCPCGPHRVQSKCGDIWSKLTK 180
Query: 181 GKANTAHCVRFPGDWFHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLR 240
GKANTAHCVRFPGDWFHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLR
Sbjct: 181 GKANTAHCVRFPGDWFHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLR 240
Query: 241 VKVVGDYTGYTSIPSFEDNYLVTPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDK 300
VKVVGDYTGYTSIPSFEDNYLVTPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDK
Sbjct: 241 VKVVGDYTGYTSIPSFEDNYLVTPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDK 300
Query: 301 IGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPN 360
IGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPN
Sbjct: 301 IGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPN 360
Query: 361 AGAHTFSVGVTEDLNTNLLIELMADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTK 420
AGAHTFSVGVTEDLNTNLLIELMADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTK
Sbjct: 361 AGAHTFSVGVTEDLNTNLLIELMADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTK 420
Query: 421 NIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKAS 480
NIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKAS
Sbjct: 421 NIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKAS 480
Query: 481 DFSELDREGYRFSTAATVYNNGAQIGPTNDHKKGGFWDSIKALWRNLIDFLTGRLCWTKC 540
DFSELDREGYRFSTAATVYNNGAQIGPTNDHKKGGFWDSIKALWRNLIDFLTGRLCWTKC
Sbjct: 481 DFSELDREGYRFSTAATVYNNGAQIGPTNDHKKGGFWDSIKALWRNLIDFLTGRLCWTKC 540
Query: 541 PRLFDFGCHIQYVCIGWXXXXXXXPAAVVFLWLLHQEGLFDPLYDWWGLEPDDDYRAXXX 600
PRLFDFGCHIQYVCIGW PAAVVFLWLLHQEGLFDPLYDWWGLEPDDDYRA
Sbjct: 541 PRLFDFGCHIQYVCIGWILLLLLIPAAVVFLWLLHQEGLFDPLYDWWGLEPDDDYRARRR 600
Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAWDVEGHHHDRQQHSHEA 660
PPAWDVEGHHHDRQQHSHEA
Sbjct: 601 HQKGRHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEA 660
Query: 661 GRNHHRGYGEVVAAGAAPLRLDRASRPGQTEVDAVVEYXXXXXXXXXXXXXXXXXXXYSP 720
GRNHHRGYGEVVAAGAAPLRLDRASRPGQTEVDAVVEY YSP
Sbjct: 661 GRNHHRGYGEVVAAGAAPLRLDRASRPGQTEVDAVVEYRERRSRHERHGGHGHRDGHYSP 720
Query: 721 SV 722
SV
Sbjct: 721 SV 722
>Os09g0525700 Conserved hypothetical protein
Length = 425
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 231/311 (74%), Gaps = 21/311 (6%)
Query: 284 MILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSCLGNQLWNFWEYDKRRIDNSQL 343
M+L+RV FTLDGLEC+KIGVGYEA+R+QPNFCS+P SCLG+QL FWE DK R++NSQ
Sbjct: 1 MLLERVLFTLDGLECNKIGVGYEAFRSQPNFCSSPLDSCLGDQLSKFWEIDKNRVNNSQP 60
Query: 344 PLYIVEGRFQRINQHPNAGAHTFSVGVTEDLNTNLLIELMADDIEYVYQRSPAKIIDIRV 403
P Y+V G+F+RINQ+PNAG HTFSVG+ E LNTNL+IEL ADDIEYVYQRS KII I +
Sbjct: 61 PQYVVLGKFERINQYPNAGVHTFSVGIPEVLNTNLMIELSADDIEYVYQRSSGKIISINI 120
Query: 404 PTFEALSQVGIANVTTKNIGKLESSYSLTFKCSSGISPVEEQLYTMKPDEVIARSFELRS 463
+FEALSQVG A V TKNIG+LE+SYSLTF C SGI+PVEEQ + MKPDE + R+F+LRS
Sbjct: 121 SSFEALSQVGSARVKTKNIGRLEASYSLTFDCLSGINPVEEQYFIMKPDEKLIRTFDLRS 180
Query: 464 TTDQAAMHQCEAILKASDFSELDREGYRFSTAATVYNNGAQIGPTNDHKKGGFW---DSI 520
+TDQA+ + C+AILKASDFSELDR+ +FST ATV NNG QIG + +H KGG W ++I
Sbjct: 181 STDQASNYTCQAILKASDFSELDRKESQFSTTATVLNNGTQIGSSENHTKGGIWGFFEAI 240
Query: 521 KA----LWRNLIDFLTGRLCWTKCPRLFDFGCHIQYVCIGWXXXXXXXPAAVVFLWLLHQ 576
KA +W LI+F TG C T+C F H V LWLLH+
Sbjct: 241 KAWCAKMWHMLINFFTGTTCSTRCWSFLKFVIH--------------GLLLVAVLWLLHR 286
Query: 577 EGLFDPLYDWW 587
+GLFDPLY WW
Sbjct: 287 KGLFDPLYYWW 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,538,340
Number of extensions: 1050814
Number of successful extensions: 2413
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2411
Number of HSP's successfully gapped: 3
Length of query: 722
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 614
Effective length of database: 11,396,689
Effective search space: 6997567046
Effective search space used: 6997567046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)