Os05g0269500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0269500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.75 | 0.42 | 8.87 | 2.1 | 1.09 | 1.56 | 0.0566 | 0.328 | 1.71 | 23.6 | 0.6427 | 1494 | -- | -- |
| 79.77 | 0.416 | 8.87 | 2.14 | 1.09 | 1.5 | 0.0915 | -- | 1.72 | 23.6 | 0.5796 | 1497 | -- | -- |
| 79.74 | 0.416 | 8.87 | 2.1 | 1.08 | 1.58 | -- | 0.372 | 1.71 | 23.6 | 0.6069 | 1497 | -- | -- |
| 79.81 | 0.416 | 8.87 | 2.13 | 1.08 | 1.5 | -- | -- | 1.72 | 23.6 | 0.5755 | 1500 | -- | -- |
| 108.33 | 0.485 | 8.83 | 2.21 | -- | 2.57 | -- | 0.466 | 1.8 | -- | 0.8304 | 1639 | -- | -- |
| 100.56 | 0.47 | 8.91 | 1.78 | 1.28 | -- | -0.0302 | -- | 1.54 | 23.7 | -- | -- | -- | -- |
| 100.56 | 0.47 | 8.91 | 1.78 | 1.28 | -- | -- | -- | 1.54 | 23.7 | -- | -- | -- | -- |
| 108.85 | 0.486 | 8.83 | 2.26 | -- | 2.56 | -- | -- | 1.8 | -- | 0.86 | 1642 | -- | -- |
| 180.47 | 0.629 | 8.95 | -- | 0.766 | 0.479 | -- | -- | 1.35 | 23.8 | 10 | 1598 | -- | -- |
| 204.15 | 0.668 | 8.88 | 1.82 | -- | -- | -- | -- | 1.55 | -- | -- | -- | -- | -- |
| 184.33 | 0.635 | 8.96 | -- | 1.3 | -- | -- | -- | 1.34 | 23.8 | -- | -- | -- | -- |
| 186.93 | 0.639 | 8.93 | -- | -- | 1.04 | -- | -- | 1.36 | -- | 10 | 1598 | -- | -- |
| 291.47 | 0.797 | 8.93 | -- | -- | -- | -- | -- | 1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 2 | 77.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 3 | 77.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 5 | 77.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 6 | 77.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 7 | 77.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 38 | 78.60 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 43 | 78.69 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 62 | 78.90 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 87 | 79.23 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 99 | 79.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 117 | 79.65 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 124 | 79.72 | radiation | 1 | 720 | < th | dose dependent | sin | 11 | NA |
| 127 | 79.77 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 129 | 79.79 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 131 | 79.82 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 145 | 79.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 172 | 79.96 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 175 | 79.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 203 | 80.08 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 222 | 80.12 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 231 | 80.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 253 | 80.18 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 264 | 80.22 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 267 | 80.24 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 270 | 80.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 273 | 80.25 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 293 | 80.30 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 296 | 80.31 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 332 | 80.39 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 340 | 80.41 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 379 | 80.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 381 | 80.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 391 | 80.48 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 398 | 80.49 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 546 | 80.64 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 576 | 80.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 579 | 80.68 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 591 | 80.69 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 11 |
| 605 | 80.72 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 7 | NA |
| 609 | 80.72 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 1 | NA |
| 619 | 80.73 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 6 | NA |
| 635 | 80.74 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 651 | 80.75 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 671 | 80.77 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 7 | NA |
| 720 | 80.83 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 733 | 80.85 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 832 | 80.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 850 | 80.96 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 872 | 80.98 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 877 | 80.98 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 906 | 81.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 925 | 81.02 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 933 | 81.03 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 12 | 1 |