BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0269500 Os05g0269500|AK072871
         (722 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11720.1  | chr4:7063291-7066784 FORWARD LENGTH=706            721   0.0  

>AT4G11720.1 | chr4:7063291-7066784 FORWARD LENGTH=706
          Length = 705

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/586 (60%), Positives = 434/586 (74%), Gaps = 20/586 (3%)

Query: 24  GTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPSGASGGEASLVARVAGVEEENDTP 83
           G +ILSKS+LE C   SD+G  L C  K+V++LAVPSG+SGGEAS+VA +  VE E+++ 
Sbjct: 24  GIQILSKSKLEKCEKTSDSGN-LNCSTKIVLNLAVPSGSSGGEASIVAEI--VEVEDNSS 80

Query: 84  SATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPDEKYVKTHKCEPYAGAKVVGECER 143
           S  +++R PPVITV+KSA YALY LTY+ RDV Y+P E +V T KCE  AG  +V  CER
Sbjct: 81  SNMQTVRIPPVITVNKSAAYALYDLTYI-RDVPYKPQEYHVTTRKCEHDAGPDIVQICER 139

Query: 144 LWDEKGNVIKQTEPICCPCGPHR-VQSKCGDIWSKLTKGKANTAHCVRFPGDWFHVFGIG 202
           L DEKGNV++QT+PICCPCGP R + S CGDI+ K+ KGKANTAHC+RFPGDWFHVFGIG
Sbjct: 140 LRDEKGNVLEQTQPICCPCGPQRRMPSSCGDIFDKMIKGKANTAHCLRFPGDWFHVFGIG 199

Query: 203 AWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLRVKVVGDYTGYTSIPSFEDNYLV 262
             SL FS+RV++K G+ V +V++GPEN+T  + DNFL+V ++GD+ GYTSIPSFED YLV
Sbjct: 200 QRSLGFSVRVELKTGTRVSEVIIGPENRTATANDNFLKVNLIGDFGGYTSIPSFEDFYLV 259

Query: 263 TPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSC 322
            PR+   + QP  LG  +S WM+L+RVRFTLDGLEC+KIGVGYEA+  QPNFCS+PY SC
Sbjct: 260 IPREAAEAGQPGSLGANYSMWMLLERVRFTLDGLECNKIGVGYEAFNTQPNFCSSPYWSC 319

Query: 323 LGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPNAGAHTFSVGVTEDLNTNLLIEL 382
           L NQLWNF E D  RID  QLPLY +EGRF+RINQHPNAG H+FS+GVTE LNTNL+IEL
Sbjct: 320 LHNQLWNFRESDINRIDRHQLPLYGLEGRFERINQHPNAGPHSFSIGVTETLNTNLMIEL 379

Query: 383 MADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTKNIGKLESSYSLTFKCSSGISPV 442
            ADDIEYV+QRSP KII+I +PTFEAL+Q G+A V  KN G++E+SYSLTF CS G++ V
Sbjct: 380 RADDIEYVFQRSPGKIINIAIPTFEALTQFGVAAVIIKNTGEVEASYSLTFDCSKGVAFV 439

Query: 443 EEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKASDFSELDREGYRFSTAATVYNNG 502
           EEQ + +KP  V  RSF+L  T DQAA + C AILK S FSE+DR   +FST ATV +NG
Sbjct: 440 EEQFFIIKPKAVTTRSFKLYPTKDQAAKYICTAILKDSQFSEVDRAECQFSTTATVLDNG 499

Query: 503 AQIGPTN-----DHKKGGFWDSIKALW----RNLIDFLTGRLCWTKCPRLFDFGCHIQYV 553
            Q+  TN     + +  GF+DSI+ LW      L+DF+TG  C  KC   FDF CHIQYV
Sbjct: 500 TQV--TNPFQIPETQPKGFFDSIRILWTKIINGLVDFITGDTCRNKCSSFFDFSCHIQYV 557

Query: 554 CIGWXXX----XXXXPAAVVFLWLLHQEGLFDPLYDWWGLEPDDDY 595
           C+ W           P   + LWLLHQ+GLFDP YDWW    D D+
Sbjct: 558 CLSWMVMFGLLLALFPITCLLLWLLHQKGLFDPCYDWWEDHFDLDH 603



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,309,160
Number of extensions: 651137
Number of successful extensions: 1504
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 616
Effective length of database: 8,200,473
Effective search space: 5051491368
Effective search space used: 5051491368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)