BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0269000 Os05g0269000|J065164H13
         (70 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0269000  Conserved hypothetical protein                      145   5e-36
Os10g0149700  Conserved hypothetical protein                       84   3e-17
Os04g0487000  Conserved hypothetical protein                       67   2e-12

>Os05g0269000 Conserved hypothetical protein
          Length = 70

 Score =  145 bits (367), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  SFVHFDLLLYNIDNVQCTREDDRERCELDIQGRGCNEEVYPWTMTERCVRRMQARRESRS 60
          SFVHFDLLLYNIDNVQCTREDDRERCELDIQGRGCNEEVYPWTMTERCVRRMQARRESRS
Sbjct: 1  SFVHFDLLLYNIDNVQCTREDDRERCELDIQGRGCNEEVYPWTMTERCVRRMQARRESRS 60

Query: 61 WSRQDPISLC 70
          WSRQDPISLC
Sbjct: 61 WSRQDPISLC 70



>Os10g0149700 Conserved hypothetical protein
          Length = 84

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 46/52 (88%)

Query: 19 REDDRERCELDIQGRGCNEEVYPWTMTERCVRRMQARRESRSWSRQDPISLC 70
          RED  E  E+DIQGRGCNEEV+PWT+ +RCVR M+ARRESRSWSR+DPISLC
Sbjct: 33 REDGYEWHEIDIQGRGCNEEVHPWTLPDRCVRWMRARRESRSWSRKDPISLC 84



>Os04g0487000 Conserved hypothetical protein
          Length = 85

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 37/42 (88%)

Query: 20 EDDRERCELDIQGRGCNEEVYPWTMTERCVRRMQARRESRSW 61
          ED RE  ELDIQGRGCNEEV+PWTMT+RCV+RM+ARRE  SW
Sbjct: 44 EDGREWRELDIQGRGCNEEVHPWTMTDRCVQRMRARRELCSW 85



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,568,678
Number of extensions: 85744
Number of successful extensions: 222
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 4
Length of query: 70
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 28
Effective length of database: 14,842,813
Effective search space: 415598764
Effective search space used: 415598764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)