Os04g0487000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0487000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.17 | 0.405 | 6.67 | -0.524 | 0.774 | 0.691 | 0.138 | 2.46 | -0.0161 | 11.8 | 20.61 | 6198 | -- | -- |
| 77.62 | 0.41 | 6.76 | -0.84 | 0.803 | 0.438 | 0.227 | -- | -0.042 | 11.6 | 26 | 3659 | -- | -- |
| 74.23 | 0.401 | 6.67 | -0.533 | 0.771 | 0.733 | -- | 2.55 | -0.0149 | 11.8 | 20.5 | 6191 | -- | -- |
| 77.12 | 0.409 | 6.77 | -0.877 | 0.842 | 0.436 | -- | -- | -0.117 | 11.8 | 26.1 | 3633 | -- | -- |
| 107.81 | 0.486 | 6.77 | -0.681 | -- | 0.398 | -- | 0.967 | -0.0704 | -- | 20.5 | 6191 | -- | -- |
| 81.97 | 0.424 | 6.76 | -0.746 | 0.761 | -- | 0.124 | -- | -0.0346 | 11.8 | -- | -- | -- | -- |
| 82.04 | 0.424 | 6.76 | -0.741 | 0.76 | -- | -- | -- | -0.0341 | 11.8 | -- | -- | -- | -- |
| 102.24 | 0.473 | 6.8 | -0.849 | -- | 0.395 | -- | -- | -0.161 | -- | 26.1 | 3633 | -- | -- |
| 95.58 | 0.455 | 6.74 | -- | 0.798 | 0.173 | -- | -- | 0.0656 | 11.9 | 29.32 | 4269 | -- | -- |
| 118.43 | 0.509 | 6.78 | -0.763 | -- | -- | -- | -- | -0.0438 | -- | -- | -- | -- | -- |
| 96.51 | 0.46 | 6.74 | -- | 0.77 | -- | -- | -- | 0.0485 | 11.9 | -- | -- | -- | -- |
| 121.04 | 0.514 | 6.78 | -- | -- | 0.349 | -- | -- | -0.0543 | -- | 26.1 | 3633 | -- | -- |
| 133.8 | 0.54 | 6.76 | -- | -- | -- | -- | -- | 0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.46 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 18 |
| 7 | 73.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 31 | 73.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 2 | 21 |
| 60 | 74.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 69 | 74.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 85 | 74.30 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 108 | 74.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 123 | 74.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 149 | 74.49 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 173 | 74.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 180 | 74.58 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 189 | 74.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 204 | 74.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 240 | 74.67 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 269 | 74.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 279 | 74.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 282 | 74.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 295 | 74.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 307 | 74.75 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 308 | 74.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 324 | 74.76 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 398 | 74.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 400 | 74.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 436 | 74.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 437 | 74.90 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 448 | 74.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 449 | 74.91 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 4 |
| 498 | 74.95 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 566 | 75.02 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 635 | 75.08 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 642 | 75.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 14 |
| 669 | 75.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 695 | 75.13 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 5 |
| 726 | 75.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 753 | 75.17 | humidity | 80 | 1440 | < th | dose independent | sin | 6 | NA |
| 823 | 75.22 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 848 | 75.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 869 | 75.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 877 | 75.25 | wind | 3 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 921 | 75.28 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |