Os05g0269000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0269000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.92 | 0.404 | 8.76 | -1.78 | 0.853 | -1.44 | 0.914 | -1.13 | 0.294 | 2.44 | 22.92 | 70 | -- | -- |
| 75.21 | 0.404 | 8.77 | -1.91 | 0.837 | -1.23 | 0.596 | -- | 0.266 | 2.5 | 23.29 | 72 | -- | -- |
| 76.26 | 0.407 | 8.77 | -1.88 | 0.846 | -1.3 | -- | -0.387 | 0.272 | 2.52 | 23.15 | 65 | -- | -- |
| 76.45 | 0.407 | 8.78 | -1.91 | 0.843 | -1.23 | -- | -- | 0.265 | 2.49 | 23.25 | 59 | -- | -- |
| 114.53 | 0.498 | 8.75 | -1.79 | -- | -1.12 | -- | -0.27 | 0.382 | -- | 20.6 | 92 | -- | -- |
| 94.01 | 0.455 | 8.73 | -1.64 | 0.677 | -- | 0.635 | -- | 0.436 | 2.78 | -- | -- | -- | -- |
| 95.39 | 0.457 | 8.74 | -1.65 | 0.68 | -- | -- | -- | 0.432 | 2.86 | -- | -- | -- | -- |
| 114.05 | 0.497 | 8.76 | -1.8 | -- | -0.834 | -- | -- | 0.35 | -- | 22.65 | 160 | -- | -- |
| 164.42 | 0.6 | 8.71 | -- | 0.709 | -0.491 | -- | -- | 0.565 | 2.64 | 22.8 | 55 | -- | -- |
| 122.15 | 0.516 | 8.73 | -1.63 | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
| 167.55 | 0.605 | 8.69 | -- | 0.648 | -- | -- | -- | 0.616 | 2.83 | -- | -- | -- | -- |
| 191.67 | 0.647 | 8.69 | -- | -- | -0.114 | -- | -- | 0.619 | -- | 22.65 | 160 | -- | -- |
| 191.86 | 0.647 | 8.69 | -- | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 2 | 74.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 16 | 75.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 42 | 75.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 51 | 75.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 52 | 75.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 54 | 75.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 55 | 75.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 57 | 75.82 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 58 | 75.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 62 | 75.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 66 | 75.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 87 | 76.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 88 | 76.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 131 | 76.42 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 23 |
| 171 | 76.98 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 22 |
| 294 | 77.70 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 305 | 77.75 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 312 | 77.78 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 22 |
| 364 | 78.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 377 | 78.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 388 | 78.14 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 14 |
| 424 | 78.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 426 | 78.39 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 20 |
| 633 | 78.89 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 11 |
| 665 | 78.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 10 |
| 721 | 79.09 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 724 | 79.10 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 725 | 79.10 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 730 | 79.11 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 736 | 79.12 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 737 | 79.12 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 740 | 79.13 | temperature | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 767 | 79.20 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 870 | 79.44 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 19 |
| 950 | 79.66 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 11 |
| 987 | 79.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |