BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0255600 Os05g0255600|AK073067
         (230 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0255600  Thioredoxin domain 2 containing protein             367   e-102
Os11g0604700  Thioredoxin domain 2 containing protein             279   1e-75
Os08g0250700  Thioredoxin domain 2 containing protein             113   1e-25

>Os05g0255600 Thioredoxin domain 2 containing protein
          Length = 230

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 185/230 (80%)

Query: 1   MDPDAVKSTLSNLAFGNVMAAAARDYQKEIVAKEKAQAASASHXXXXXXXXXXXXXXXXX 60
           MDPDAVKSTLSNLAFGNVMAAAARDYQKEIVAKEKAQAASASH                 
Sbjct: 1   MDPDAVKSTLSNLAFGNVMAAAARDYQKEIVAKEKAQAASASHDEVDLDELLDDPELEKL 60

Query: 61  HAERIXXXXXXXXXXXXXXXQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 120
           HAERI               QGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD
Sbjct: 61  HAERIAALKKEVEKREVLKRQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 120

Query: 121 KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD 180
           KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD
Sbjct: 121 KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD 180

Query: 181 DFSTRALENILKMKGIIXXXXXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
           DFSTRALENILKMKGII             TYMSMNRRVRSSTAQDSDSD
Sbjct: 181 DFSTRALENILKMKGIIDEKKKDEDDEDDETYMSMNRRVRSSTAQDSDSD 230



>Os11g0604700 Thioredoxin domain 2 containing protein
          Length = 177

 Score =  279 bits (713), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 139/170 (81%)

Query: 61  HAERIXXXXXXXXXXXXXXXQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 120
           HAERI               QGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD
Sbjct: 8   HAERIAALKKEVEKREVLKRQGHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMD 67

Query: 121 KHLKALAPIYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKD 180
           KHLK LAP+YLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIA DRL+GFQDLGSKD
Sbjct: 68  KHLKTLAPVYLGTKFIKLDAENAPFFVTKLGIKTLPCVILFKKGIAVDRLVGFQDLGSKD 127

Query: 181 DFSTRALENILKMKGIIXXXXXXXXXXXXXTYMSMNRRVRSSTAQDSDSD 230
           DFSTRALENILKMKGII             T MSMNRR+RSSTAQDSDS+
Sbjct: 128 DFSTRALENILKMKGIIDEKKKDEDDEDDETDMSMNRRIRSSTAQDSDSE 177



>Os08g0250700 Thioredoxin domain 2 containing protein
          Length = 210

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 82  GHGEYREITEGDFLGEVTGSEKVICHFYHREFYRCKIMDKHLKALAPIYLGTKFIKLDAE 141
           GHGEY E+ E +F      S++++CHFY R+ + CK+MDKHL  LA  ++ T+F+K+ AE
Sbjct: 65  GHGEYGEVPEKEFFAAAKASDRLVCHFY-RDNWPCKVMDKHLSILAKQHVETRFVKVHAE 123

Query: 142 NAPFFVTKLGIKTLPCVILFKKGIAADRLIGFQDLGSKDDFSTRALENILKMKGII 197
            APF   KL I  LP + L K     D ++GF +LG KDDFST  LE  L    +I
Sbjct: 124 KAPFLTEKLRIVVLPTLALVKNTKVEDYVVGFDELGGKDDFSTEDLEERLAKAQVI 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,273,180
Number of extensions: 163702
Number of successful extensions: 299
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)