BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0238400 Os05g0238400|AK073471
         (233 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0238400  Harpin-induced 1 domain containing protein          281   4e-76
Os01g0234700  Harpin-induced 1 domain containing protein          124   5e-29

>Os05g0238400 Harpin-induced 1 domain containing protein
          Length = 233

 Score =  281 bits (718), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/233 (65%), Positives = 152/233 (65%)

Query: 1   MARSPEPPRYYAAAGYHRPSPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRPQAPAIAV 60
           MARSPEPPRYYAAAGYHRPSPF                            YRPQAPAIAV
Sbjct: 1   MARSPEPPRYYAAAGYHRPSPFSSVAASCVVAALFILLAAGGAAAALFLLYRPQAPAIAV 60

Query: 61  TAVQLPSFASRNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEVGSMYIPAGQID 120
           TAVQLPSFASRNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEVGSMYIPAGQID
Sbjct: 61  TAVQLPSFASRNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEVGSMYIPAGQID 120

Query: 121 GGRTQYMATSFXXXXXXXXXXXXXXXXXXXXQTITXXXXXXXXXXXXXXXXXXXXXXXXX 180
           GGRTQYMATSF                    QTIT                         
Sbjct: 121 GGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPAAVGAVALQQEQPPPQQ 180

Query: 181 XXXXXXXXMEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLGFRC 233
                   MEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLGFRC
Sbjct: 181 QQVAALPVMEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLGFRC 233



>Os01g0234700 Harpin-induced 1 domain containing protein
          Length = 259

 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 73/82 (89%), Gaps = 1/82 (1%)

Query: 51  YRPQAPAIAVTAVQLPSFAS-RNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEV 109
           +RP+ P IAV AV+LP+FAS  NGTVAFTF+Q A+VRNPNR+PLAH+DSSLRVAYAGGE+
Sbjct: 96  FRPRPPDIAVAAVRLPAFASGPNGTVAFTFEQTAAVRNPNRAPLAHFDSSLRVAYAGGEL 155

Query: 110 GSMYIPAGQIDGGRTQYMATSF 131
           GS+YIPAG IDGGRT+ M+ SF
Sbjct: 156 GSVYIPAGLIDGGRTKDMSASF 177




 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 42/45 (93%)

Query: 189 MEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLGFRC 233
           MEVDSLLVVKG+VT+LRV THHV AAKVCR+GVSP DG+VLGFRC
Sbjct: 215 MEVDSLLVVKGRVTVLRVLTHHVEAAKVCRVGVSPVDGKVLGFRC 259



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,622,695
Number of extensions: 172586
Number of successful extensions: 329
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 3
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)