Os01g0234700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os01g0234700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.18 | 0.521 | 8.21 | 1.29 | 1.39 | 0.986 | 0.583 | 0.487 | 0.312 | 10.9 | 7.65 | 231 | -- | -- |
| 123.4 | 0.517 | 8.21 | 1.3 | 1.51 | 1.05 | 0.325 | -- | 0.326 | 10.9 | 7.64 | 203 | -- | -- |
| 123.37 | 0.517 | 8.21 | 1.3 | 1.45 | 0.997 | -- | 0.0243 | 0.316 | 10.8 | 7.65 | 200 | -- | -- |
| 123.36 | 0.517 | 8.21 | 1.3 | 1.46 | 0.999 | -- | -- | 0.308 | 10.9 | 7.64 | 200 | -- | -- |
| 152.96 | 0.576 | 8.26 | 1.14 | -- | 0.684 | -- | 1.27 | 0.227 | -- | 17.47 | 765 | -- | -- |
| 137.57 | 0.55 | 8.22 | 1.31 | 0.946 | -- | 0.613 | -- | 0.289 | 7.7 | -- | -- | -- | -- |
| 138.64 | 0.551 | 8.22 | 1.33 | 0.946 | -- | -- | -- | 0.288 | 7.72 | -- | -- | -- | -- |
| 143.49 | 0.558 | 8.2 | 1.37 | -- | 1.18 | -- | -- | 0.378 | -- | 3.373 | 909 | -- | -- |
| 167.91 | 0.604 | 8.24 | -- | 1.44 | 1 | -- | -- | 0.167 | 10.8 | 8.386 | 200 | -- | -- |
| 186.89 | 0.639 | 8.25 | 1.34 | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
| 185.26 | 0.637 | 8.26 | -- | 0.956 | -- | -- | -- | 0.14 | 7.63 | -- | -- | -- | -- |
| 189.54 | 0.641 | 8.25 | -- | -- | 1.15 | -- | -- | 0.215 | -- | 7.8 | 874 | -- | -- |
| 234.4 | 0.715 | 8.28 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.25 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 4 | 115.95 | humidity | 60.0 | 30 | > th | dose independent | rect. | 4 | 20 |
| 5 | 116.37 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 20 |
| 12 | 116.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 14 | 116.96 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 20 |
| 24 | 117.79 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 20 |
| 41 | 118.26 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 16 |
| 43 | 118.38 | humidity | 60.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 60 | 119.03 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 64 | 119.14 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 66 | 119.23 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 70 | 119.28 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 9 |
| 71 | 119.33 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 72 | 119.36 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 81 | 119.60 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 95 | 119.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 105 | 120.06 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 114 | 120.15 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 122 | 120.23 | wind | 1.0 | 90 | < th | dose independent | rect. | 21 | 5 |
| 152 | 120.54 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 165 | 120.61 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 171 | 120.64 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 20 |
| 172 | 120.66 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 20 |
| 212 | 120.93 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 230 | 121.11 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 244 | 121.25 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 21 |
| 299 | 121.56 | wind | 1.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 306 | 121.60 | wind | 1.0 | 90 | < th | dose independent | rect. | 13 | 13 |
| 315 | 121.65 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 324 | 121.70 | humidity | 60.0 | 10 | > th | dose independent | rect. | 4 | 8 |
| 331 | 121.76 | wind | 1.0 | 90 | > th | dose independent | sin | 17 | NA |
| 387 | 121.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 391 | 122.00 | wind | 3.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 392 | 122.01 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 398 | 122.02 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 406 | 122.06 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 24 | 4 |
| 421 | 122.13 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 444 | 122.21 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 20 |
| 452 | 122.23 | wind | 3.0 | 30 | < th | dose dependent | rect. | 18 | 10 |
| 480 | 122.34 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 24 | 18 |
| 502 | 122.43 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 565 | 122.63 | humidity | 80.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 596 | 122.73 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 22 | 20 |
| 612 | 122.79 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 12 |
| 614 | 122.79 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 617 | 122.81 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 620 | 122.81 | temperature | 15.0 | 30 | > th | dose independent | rect. | 4 | 20 |
| 625 | 122.82 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 9 | 10 |
| 646 | 122.89 | radiation | 10.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 663 | 122.95 | wind | 9.0 | 10 | < th | dose independent | rect. | 4 | 20 |
| 664 | 122.95 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 20 |
| 666 | 122.95 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 20 |
| 668 | 122.96 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 672 | 122.98 | wind | 9.0 | 30 | < th | dose dependent | rect. | 24 | 4 |
| 680 | 123.00 | wind | 9.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 681 | 123.00 | temperature | 10.0 | 10 | > th | dose independent | rect. | 24 | 4 |
| 683 | 123.00 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 685 | 123.00 | humidity | 50.0 | 10 | > th | dose independent | rect. | 24 | 4 |
| 693 | 123.00 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 4 |
| 705 | 123.00 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 734 | 123.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 743 | 123.06 | wind | 3.0 | 30 | < th | dose dependent | rect. | 11 | 17 |
| 762 | 123.11 | humidity | 50.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 778 | 123.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 782 | 123.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 825 | 123.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 833 | 123.29 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 4 |
| 835 | 123.29 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 4 |
| 856 | 123.33 | humidity | 90.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 870 | 123.36 | wind | 1.0 | 90 | < th | dose independent | sin | 17 | NA |
| 877 | 123.37 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 909 | 123.44 | humidity | 70.0 | 10 | > th | dose independent | rect. | 4 | 6 |
| 910 | 123.44 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 913 | 123.44 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 920 | 123.46 | wind | 3.0 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 933 | 123.48 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 24 | 4 |
| 996 | 123.63 | wind | 3.0 | 30 | < th | dose dependent | rect. | 13 | 15 |