Os05g0238400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os05g0238400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.78 | 0.545 | 3.88 | -1.5 | 0.855 | -2.1 | -0.636 | 8.92 | -0.33 | 0.0365 | 1000 | 304 | -- | -- |
| 136.72 | 0.549 | 3.79 | -0.948 | 0.877 | -0.446 | -0.602 | -- | -0.335 | 0.0525 | 1000 | 304 | -- | -- |
| 136.41 | 0.544 | 3.88 | -1.49 | 0.857 | -2.14 | -- | 9.13 | -0.329 | 0.228 | 1000 | 310 | -- | -- |
| 135.71 | 0.543 | 3.78 | -0.945 | 0.847 | -0.562 | -- | -- | -0.318 | 0.218 | 1001 | 898 | -- | -- |
| 182.15 | 0.629 | 3.87 | -1.48 | -- | -2.27 | -- | 9.62 | -0.307 | -- | 1000 | 402 | -- | -- |
| 142.17 | 0.559 | 3.79 | -0.869 | 0.867 | -- | -0.636 | -- | -0.365 | 0.018 | -- | -- | -- | -- |
| 143.83 | 0.562 | 3.79 | -0.845 | 0.871 | -- | -- | -- | -0.363 | 0.207 | -- | -- | -- | -- |
| 181.8 | 0.628 | 3.76 | -0.915 | -- | -0.627 | -- | -- | -0.303 | -- | 1001 | 853 | -- | -- |
| 157.64 | 0.585 | 3.76 | -- | 0.85 | -0.411 | -- | -- | -0.224 | 0.191 | 1002 | 975 | -- | -- |
| 191.54 | 0.647 | 3.77 | -0.817 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 162.66 | 0.597 | 3.77 | -- | 0.859 | -- | -- | -- | -0.269 | 0.154 | -- | -- | -- | -- |
| 202.85 | 0.663 | 3.74 | -- | -- | -0.457 | -- | -- | -0.204 | -- | 1002 | 890 | -- | -- |
| 209.14 | 0.675 | 3.75 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.27 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 2 |
| 2 | 124.81 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 13 | 6 |
| 16 | 126.32 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 12 | 10 |
| 20 | 126.49 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 22 | 126.55 | atmosphere | 1000 | 270 | > th | dose independent | sin | 15 | NA |
| 24 | 126.64 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 11 | 12 |
| 26 | 126.65 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 29 | 126.83 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 32 | 126.91 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 10 | 14 |
| 36 | 126.96 | atmosphere | 1000 | 720 | > th | dose independent | sin | 20 | NA |
| 41 | 127.32 | atmosphere | 1000 | 10 | > th | dose independent | sin | 12 | NA |
| 45 | 127.38 | atmosphere | 1000 | 270 | > th | dose independent | sin | 12 | NA |
| 50 | 127.46 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 58 | 127.56 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 72 | 127.81 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 14 | 13 |
| 105 | 128.29 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 107 | 128.32 | atmosphere | 1000 | 10 | > th | dose independent | sin | 10 | NA |
| 164 | 128.95 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 14 | 10 |
| 169 | 128.98 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 18 | 10 |
| 224 | 129.39 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 16 | NA |
| 226 | 129.40 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 16 | 3 |
| 262 | 129.62 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 17 | 10 |
| 266 | 129.63 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 16 | 1 |
| 273 | 129.66 | atmosphere | 995 | 720 | > th | dose dependent | sin | 20 | NA |
| 354 | 130.00 | atmosphere | 1000 | 720 | < th | dose independent | sin | 17 | NA |
| 362 | 130.04 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 18 | 1 |
| 403 | 130.19 | atmosphere | 1000 | 270 | < th | dose independent | sin | 13 | NA |
| 411 | 130.22 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 14 | 18 |
| 423 | 130.26 | atmosphere | 1015 | 270 | < th | dose dependent | sin | 13 | NA |
| 488 | 130.52 | temperature | 25 | 10 | < th | dose independent | rect. | 14 | 10 |
| 523 | 130.65 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 614 | 130.99 | temperature | 25 | 30 | < th | dose independent | sin | 16 | NA |
| 628 | 131.04 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 12 |
| 723 | 131.27 | temperature | 25 | 10 | < th | dose independent | rect. | 12 | 12 |
| 731 | 131.28 | atmosphere | 995 | 270 | > th | dose dependent | sin | 17 | NA |
| 748 | 131.33 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 6 |
| 789 | 131.44 | wind | 9 | 10 | < th | dose independent | sin | 12 | NA |
| 897 | 131.67 | wind | 7 | 10 | > th | dose dependent | rect. | 18 | 3 |