BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0238400 Os05g0238400|AK073471
         (233 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23930.1  | chr4:12436131-12436694 REVERSE LENGTH=188          108   2e-24
AT1G64450.1  | chr1:23941758-23942786 REVERSE LENGTH=343          103   7e-23

>AT4G23930.1 | chr4:12436131-12436694 REVERSE LENGTH=188
          Length = 187

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 92/183 (50%), Gaps = 28/183 (15%)

Query: 51  YRPQAPAIAVTAVQLPSFASRNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEVG 110
           +RP+ P I+VT+V++PSF+  N +V+FTF Q ++VRNPNR+  +HY++ +++ Y G  +G
Sbjct: 33  FRPRDPEISVTSVKVPSFSVANSSVSFTFSQFSAVRNPNRAAFSHYNNVIQLFYYGNRIG 92

Query: 111 SMYIPAGQIDGGRTQYMATSFXXXXXXXXXXXXXXXXXXXXQTITXXXXXXXXXXXXXXX 170
             ++PAG+I+ GRT+ M  +F                    Q                  
Sbjct: 93  YTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQN----------------- 135

Query: 171 XXXXXXXXXXXXXXXXXXMEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLG 230
                             +E++S L + G+V +L +FTH + A   CRI +S +DG ++ 
Sbjct: 136 -----------SDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVA 184

Query: 231 FRC 233
            RC
Sbjct: 185 VRC 187



>AT1G64450.1 | chr1:23941758-23942786 REVERSE LENGTH=343
          Length = 342

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 62/81 (76%)

Query: 51  YRPQAPAIAVTAVQLPSFASRNGTVAFTFQQLASVRNPNRSPLAHYDSSLRVAYAGGEVG 110
           ++P+ P I+V AVQLPSFA  N T  F+F Q  +VRNPNR+  +HYDSS+++ Y+G +VG
Sbjct: 41  FKPKDPKISVNAVQLPSFAVSNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVG 100

Query: 111 SMYIPAGQIDGGRTQYMATSF 131
            M+IPAG+ID GR QYMA +F
Sbjct: 101 FMFIPAGKIDSGRIQYMAATF 121




 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 189 MEVDSLLVVKGKVTILRVFTHHVVAAKVCRIGVSPADGRVLGFRC 233
           ME++S + + G+V +L VFTHHVVA   CR+ VS ADG VLGF C
Sbjct: 298 MEIESKMELAGRVKVLHVFTHHVVAKSDCRVTVSIADGSVLGFHC 342



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,172,341
Number of extensions: 88313
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 3
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)