BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0229000 Os05g0229000|J013000D22
         (70 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0229000  D111/G-patch domain containing protein              147   1e-36
Os04g0115400  D111/G-patch domain containing protein               97   3e-21

>Os05g0229000 D111/G-patch domain containing protein
          Length = 70

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MNHRPTENLDTEGLEQASVDTQLTSSNIGFRLLQKMGWKGKGLGKNEQAWLLCSTVQAPG 60
          MNHRPTENLDTEGLEQASVDTQLTSSNIGFRLLQKMGWKGKGLGKNEQAWLLCSTVQAPG
Sbjct: 1  MNHRPTENLDTEGLEQASVDTQLTSSNIGFRLLQKMGWKGKGLGKNEQAWLLCSTVQAPG 60

Query: 61 QYQLHCTQFN 70
          QYQLHCTQFN
Sbjct: 61 QYQLHCTQFN 70



>Os04g0115400 D111/G-patch domain containing protein
          Length = 144

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 48/49 (97%)

Query: 1  MNHRPTENLDTEGLEQASVDTQLTSSNIGFRLLQKMGWKGKGLGKNEQA 49
          M+HRPTENL+TEGLEQASVDTQLTSSN+GFRLLQKMGWKGKGLGKNEQ 
Sbjct: 37 MSHRPTENLETEGLEQASVDTQLTSSNVGFRLLQKMGWKGKGLGKNEQG 85



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,416,342
Number of extensions: 71260
Number of successful extensions: 158
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 28
Effective length of database: 14,842,813
Effective search space: 415598764
Effective search space used: 415598764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)