Os04g0115400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : D111/G-patch domain containing protein.
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Os04g0115400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : D111/G-patch domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.49 | 0.246 | 10.6 | -0.745 | 0.321 | 0.804 | 0.108 | -0.19 | -0.0817 | 16 | 21.4 | 1278 | -- | -- |
| 27.58 | 0.245 | 10.6 | -0.705 | 0.324 | 0.812 | 0.118 | -- | -0.0668 | 15.9 | 21.3 | 1279 | -- | -- |
| 27.52 | 0.244 | 10.6 | -0.745 | 0.323 | 0.807 | -- | -0.196 | -0.0822 | 15.9 | 21.35 | 1273 | -- | -- |
| 27.62 | 0.245 | 10.6 | -0.696 | 0.322 | 0.821 | -- | -- | -0.0702 | 15.9 | 21.3 | 1278 | -- | -- |
| 32.83 | 0.267 | 10.6 | -0.755 | -- | 0.804 | -- | -0.154 | -0.0856 | -- | 21.39 | 1530 | -- | -- |
| 46.9 | 0.321 | 10.5 | -0.366 | 0.277 | -- | 0.28 | -- | 0.155 | 16.5 | -- | -- | -- | -- |
| 47.1 | 0.321 | 10.5 | -0.364 | 0.278 | -- | -- | -- | 0.156 | 16.4 | -- | -- | -- | -- |
| 32.88 | 0.267 | 10.6 | -0.716 | -- | 0.814 | -- | -- | -0.0768 | -- | 21.4 | 1530 | -- | -- |
| 37.59 | 0.286 | 10.6 | -- | 0.317 | 0.604 | -- | -- | 0.0316 | 15.1 | 22.27 | 1160 | -- | -- |
| 51.26 | 0.335 | 10.5 | -0.375 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 50.6 | 0.333 | 10.5 | -- | 0.285 | -- | -- | -- | 0.197 | 16.4 | -- | -- | -- | -- |
| 41.8 | 0.301 | 10.6 | -- | -- | 0.486 | -- | -- | 0.0491 | -- | 22.1 | 427 | -- | -- |
| 54.97 | 0.346 | 10.5 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 41 | 28.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 44 | 28.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 73 | 28.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 97 | 28.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 114 | 28.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 115 | 28.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 120 | 28.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 131 | 28.79 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 134 | 28.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 146 | 28.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 149 | 28.84 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 181 | 28.92 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 196 | 28.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 201 | 28.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 208 | 28.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 259 | 29.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 283 | 29.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 305 | 29.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 370 | 29.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 387 | 29.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 388 | 29.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 400 | 29.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 406 | 29.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 411 | 29.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 419 | 29.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 437 | 29.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 446 | 29.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 471 | 29.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 476 | 29.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 482 | 29.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 509 | 29.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 510 | 29.84 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 537 | 29.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 592 | 29.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 596 | 29.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 663 | 29.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 676 | 30.01 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 693 | 30.02 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 732 | 30.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 754 | 30.07 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 759 | 30.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 770 | 30.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 776 | 30.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 794 | 30.10 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 903 | 30.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 933 | 30.23 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 936 | 30.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 946 | 30.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 958 | 30.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |