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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0229000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : D111/G-patch domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.85 (0.0252) R2 : 0.789
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.11 (0.0822) R2dC : 1.16 R2C : 0.648
β3 : -0.945 (0.0746) R2dE : 0.134 R2E : -0.375
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0536) R2dN8 : 0.00317 R2N8 : 0.00873
σ : 0.472
deviance : 102.51
__
_____
C
peak time of C : 14.6
E
wheather : temperature
threshold : 19.3
memory length : 198
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.7
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.79 0.45 5.85 0.514 3.16 -1.13 1.12 -0.663 -0.0702 14.6 19.6 226 1.25 19.4
92.89 0.449 5.86 0.614 3.2 -1.13 0.736 -- -0.0895 14.6 19.3 221 1.32 19.4
93.58 0.451 5.85 0.593 3.12 -1.08 -- 0.0163 -0.071 14.6 19.3 223 1.28 19.4
93.57 0.451 5.84 0.588 3.12 -1.06 -- -- -0.0635 14.6 19.31 222 1.3 19.4
144.01 0.559 5.95 0.406 -- 2.03 -- 1.19 -0.26 -- 10.07 637 0.648 18.3
128.94 0.532 5.88 0.352 2.46 -- 0.363 -- -0.202 15.1 -- -- -- --
129.37 0.533 5.88 0.36 2.47 -- -- -- -0.2 15.1 -- -- -- --
128.99 0.529 5.9 0.397 -- 2.55 -- -- -0.231 -- 12.51 671 2.28 14.8
102.51 0.472 5.85 -- 3.11 -0.945 -- -- -0.111 14.6 19.3 198 1.7 19
477.02 1.02 5.89 0.255 -- -- -- -- -0.264 -- -- -- -- --
132.78 0.539 5.89 -- 2.46 -- -- -- -0.24 15.1 -- -- -- --
132 0.535 5.89 -- -- 2.51 -- -- -0.258 -- 12.31 685 2.05 14.9
478.73 1.02 5.89 -- -- -- -- -- -0.293 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.98 temperature 20.0 270 > th dose independent rect. 1 19
2 94.73 radiation 10.0 90 < th dose dependent rect. 3 18
3 95.03 temperature 20.0 90 > th dose independent rect. 3 18
5 95.35 temperature 15.0 270 > th dose independent rect. 24 21
9 95.82 wind 7.0 90 < th dose independent rect. 21 6
11 95.95 temperature 10.0 270 > th dose dependent rect. 1 5
12 95.98 radiation 30.0 270 < th dose independent rect. 15 14
16 96.17 temperature 10.0 90 > th dose independent rect. 21 6
17 96.17 temperature 30.0 90 < th dose independent rect. 21 6
18 96.17 humidity 50.0 90 > th dose independent rect. 21 6
21 96.17 atmosphere 995.0 90 > th dose independent rect. 21 6
22 96.17 radiation 1.0 90 < th dose independent rect. 21 6
27 96.17 precipitation 0.1 90 < th dose independent rect. 21 6
29 96.17 atmosphere 1015.0 90 < th dose independent rect. 3 18
30 96.17 radiation 1.0 90 < th dose dependent rect. 21 6
35 96.17 precipitation 0.1 90 < th dose dependent rect. 21 6
37 96.68 temperature 15.0 270 > th dose independent rect. 15 14
38 96.83 wind 9.0 90 < th dose independent rect. 3 18
41 96.94 temperature 20.0 270 > th dose independent rect. 1 5
43 97.09 wind 7.0 270 < th dose independent rect. 21 3
47 97.17 temperature 15.0 270 > th dose dependent rect. 2 3
50 97.32 temperature 10.0 270 > th dose independent rect. 21 3
51 97.32 temperature 30.0 270 < th dose independent rect. 21 3
52 97.32 humidity 50.0 270 > th dose independent rect. 21 3
55 97.32 atmosphere 995.0 270 > th dose independent rect. 21 3
56 97.32 radiation 1.0 270 < th dose independent rect. 21 3
62 97.32 radiation 1.0 270 < th dose dependent rect. 21 3
70 97.39 temperature 15.0 270 > th dose dependent rect. 3 1
71 97.39 temperature 10.0 10 > th dose dependent rect. 3 4
72 97.48 precipitation 0.1 270 < th dose independent rect. 21 3
73 97.48 precipitation 0.1 270 < th dose dependent rect. 21 3
75 97.49 temperature 20.0 270 > th dose independent rect. 2 3
76 97.49 precipitation 0.1 270 < th dose independent rect. 5 10
77 97.49 precipitation 0.1 270 < th dose dependent rect. 5 10
79 97.58 atmosphere 995.0 270 > th dose independent rect. 5 10
81 97.59 temperature 10.0 270 > th dose independent rect. 5 10
82 97.59 atmosphere 1015.0 270 < th dose independent rect. 5 10
85 97.63 radiation 40.0 270 < th dose dependent rect. 15 14
87 97.86 wind 9.0 270 < th dose independent rect. 5 10
89 97.91 precipitation 0.1 90 < th dose independent rect. 3 18
90 97.91 atmosphere 1015.0 270 < th dose independent rect. 24 21
91 97.91 precipitation 0.1 90 < th dose dependent rect. 3 18
92 97.93 humidity 60.0 90 > th dose dependent rect. 3 4
98 98.10 wind 9.0 270 < th dose independent rect. 24 21
101 98.14 radiation 10.0 90 < th dose independent rect. 3 19
102 98.14 wind 9.0 270 < th dose dependent rect. 21 3
107 98.22 wind 1.0 270 > th dose independent rect. 21 3
112 98.29 wind 9.0 90 < th dose dependent rect. 21 6
113 98.29 radiation 10.0 10 < th dose dependent rect. 3 19
114 98.31 wind 7.0 10 < th dose independent rect. 22 5
131 98.34 atmosphere 1015.0 270 < th dose independent rect. 1 19
138 98.36 precipitation 0.1 10 < th dose independent rect. 22 5
139 98.36 precipitation 0.1 10 < th dose dependent rect. 22 5
145 98.41 temperature 10.0 10 > th dose independent rect. 22 5
146 98.41 temperature 30.0 10 < th dose independent rect. 22 5
147 98.41 humidity 50.0 10 > th dose independent rect. 22 5
150 98.41 atmosphere 995.0 10 > th dose independent rect. 22 5
151 98.41 radiation 1.0 10 < th dose independent rect. 22 5
156 98.41 temperature 10.0 10 > th dose independent rect. 3 19
158 98.41 atmosphere 1015.0 10 < th dose independent rect. 3 19
159 98.41 radiation 1.0 10 < th dose dependent rect. 22 5
165 98.42 radiation 20.0 90 < th dose dependent rect. 3 4
167 98.49 humidity 50.0 90 > th dose dependent rect. 21 6
172 98.54 temperature 20.0 270 > th dose independent rect. 3 1
209 98.72 wind 9.0 270 < th dose independent rect. 15 14
210 98.72 precipitation 0.1 30 < th dose independent rect. 7 20
212 98.72 precipitation 0.1 30 < th dose dependent rect. 7 20
236 98.78 humidity 50.0 270 > th dose dependent rect. 21 3
237 98.78 radiation 10.0 270 < th dose dependent rect. 24 20
238 98.79 wind 1.0 270 > th dose independent rect. 20 5
239 98.79 radiation 1.0 270 < th dose independent rect. 1 19
241 98.81 precipitation 0.1 10 < th dose independent rect. 3 19
242 98.81 precipitation 0.1 10 < th dose dependent rect. 3 19
247 98.86 humidity 70.0 90 > th dose dependent rect. 3 6
248 98.87 atmosphere 995.0 90 > th dose independent rect. 3 18
249 98.87 wind 9.0 30 < th dose dependent rect. 3 4
250 98.88 wind 9.0 270 < th dose independent rect. 1 19
251 98.88 precipitation 0.1 270 < th dose independent rect. 24 21
252 98.88 precipitation 0.1 270 < th dose dependent rect. 24 21
255 98.95 humidity 80.0 90 > th dose independent rect. 3 4
265 99.11 humidity 50.0 270 > th dose dependent rect. 1 4
273 99.19 precipitation 0.1 30 < th dose independent rect. 3 4
274 99.19 precipitation 0.1 30 < th dose dependent rect. 3 4
280 99.25 wind 9.0 30 < th dose independent rect. 3 4
281 99.25 temperature 10.0 30 > th dose independent rect. 3 4
283 99.25 temperature 30.0 30 < th dose independent rect. 3 4
284 99.25 humidity 50.0 30 > th dose independent rect. 3 4
287 99.25 atmosphere 995.0 30 > th dose independent rect. 3 4
288 99.25 atmosphere 1015.0 30 < th dose independent rect. 3 4
289 99.25 radiation 20.0 30 < th dose independent rect. 3 4
293 99.25 temperature 10.0 30 > th dose independent rect. 7 20
294 99.26 humidity 50.0 10 > th dose dependent rect. 22 5
297 99.30 radiation 1.0 270 < th dose independent rect. 1 5
300 99.33 radiation 20.0 90 < th dose dependent rect. 3 10
303 99.36 wind 9.0 10 < th dose dependent rect. 22 5
304 99.36 radiation 20.0 90 < th dose dependent rect. 3 8
306 99.37 precipitation 0.1 270 < th dose independent rect. 5 20
307 99.37 precipitation 0.1 270 < th dose dependent rect. 5 20
320 99.38 temperature 15.0 270 > th dose independent rect. 10 11
345 99.42 radiation 1.0 270 < th dose dependent rect. 1 4
346 99.42 atmosphere 995.0 90 > th dose dependent rect. 21 6
348 99.45 radiation 30.0 90 < th dose dependent rect. 3 6
356 99.49 precipitation 0.1 270 < th dose independent rect. 1 19
358 99.49 precipitation 0.1 270 < th dose dependent rect. 1 19
388 99.62 radiation 10.0 90 < th dose dependent rect. 3 12
403 99.70 wind 9.0 90 < th dose independent rect. 7 20
416 99.71 temperature 10.0 270 > th dose independent rect. 1 4
418 99.71 temperature 30.0 270 < th dose independent rect. 1 4
419 99.71 humidity 50.0 270 > th dose independent rect. 1 4
422 99.71 atmosphere 995.0 270 > th dose independent rect. 1 4
423 99.71 atmosphere 1010.0 270 < th dose independent rect. 1 4
428 99.71 temperature 10.0 270 > th dose independent rect. 5 20
436 99.73 wind 9.0 270 < th dose independent rect. 1 4
443 99.76 wind 9.0 270 < th dose independent rect. 5 20
444 99.77 radiation 40.0 10 < th dose dependent rect. 3 4
446 99.78 temperature 10.0 10 > th dose dependent rect. 3 19
459 99.84 temperature 10.0 1440 > th dose independent rect. 23 5
462 99.84 temperature 30.0 1440 < th dose independent rect. 23 5
466 99.84 humidity 50.0 1440 > th dose independent rect. 23 5
475 99.84 atmosphere 995.0 1440 > th dose independent rect. 23 5
476 99.84 radiation 1.0 1440 < th dose independent rect. 23 5
496 99.84 temperature 10.0 1440 > th dose independent rect. 4 19
502 99.84 radiation 1.0 1440 < th dose dependent rect. 23 5
510 99.88 temperature 10.0 90 > th dose dependent rect. 3 19
514 99.91 atmosphere 995.0 30 > th dose independent rect. 7 20
516 99.91 temperature 10.0 270 > th dose dependent rect. 1 19
517 99.92 humidity 60.0 270 > th dose dependent rect. 3 1
518 99.92 radiation 30.0 10 < th dose dependent rect. 3 6
530 99.99 wind 9.0 1440 < th dose independent rect. 4 4
531 99.99 temperature 10.0 1440 > th dose independent rect. 4 4
534 99.99 temperature 30.0 1440 < th dose independent rect. 4 4
538 99.99 humidity 50.0 1440 > th dose independent rect. 4 4
543 99.99 atmosphere 995.0 1440 > th dose independent rect. 4 4
544 99.99 atmosphere 1015.0 1440 < th dose independent rect. 4 4
546 99.99 temperature 10.0 1440 > th dose independent rect. 8 20
552 100.01 precipitation 0.1 270 < th dose independent rect. 1 4
554 100.01 precipitation 0.1 270 < th dose dependent rect. 1 4
635 100.34 atmosphere 1015.0 90 < th dose independent rect. 21 6
640 100.36 precipitation 0.1 270 < th dose independent rect. 15 14
641 100.36 precipitation 0.1 270 < th dose dependent rect. 15 14
668 100.41 radiation 10.0 270 < th dose dependent rect. 1 8
704 100.59 wind 3.0 30 < th dose independent rect. 3 4
706 100.59 temperature 10.0 270 > th dose dependent rect. 24 21
712 100.61 humidity 50.0 30 > th dose dependent rect. 3 19
724 100.62 wind 1.0 270 > th dose independent rect. 10 10
735 100.64 atmosphere 995.0 270 > th dose independent rect. 1 19
739 100.66 atmosphere 995.0 10 > th dose independent rect. 3 19
744 100.69 atmosphere 995.0 10 > th dose dependent rect. 22 5
748 100.70 atmosphere 995.0 270 > th dose independent rect. 24 21
749 100.72 humidity 80.0 270 > th dose independent rect. 3 1
768 100.81 atmosphere 1015.0 270 < th dose independent rect. 21 3
825 100.92 radiation 10.0 90 < th dose dependent rect. 3 14
835 100.98 wind 7.0 270 < th dose independent rect. 20 14
853 101.03 atmosphere 995.0 270 > th dose independent rect. 5 20
862 101.05 wind 9.0 270 < th dose independent rect. 3 1
863 101.05 temperature 10.0 270 > th dose independent rect. 3 1
865 101.05 temperature 30.0 270 < th dose independent rect. 3 1
866 101.05 humidity 50.0 270 > th dose independent rect. 3 1
869 101.05 atmosphere 995.0 270 > th dose independent rect. 3 1
870 101.05 atmosphere 1010.0 270 < th dose independent rect. 3 1
872 101.05 radiation 1.0 270 < th dose independent rect. 3 1
878 101.05 temperature 10.0 270 > th dose independent rect. 4 23
879 101.05 radiation 1.0 270 < th dose dependent rect. 3 1
888 101.07 radiation 10.0 10 < th dose independent rect. 3 19
949 101.20 atmosphere 1015.0 10 < th dose independent rect. 22 5
950 101.20 atmosphere 995.0 270 > th dose dependent rect. 21 3
955 101.22 radiation 10.0 270 < th dose dependent rect. 1 12
979 101.33 atmosphere 1015.0 270 < th dose independent rect. 10 10
980 101.33 temperature 10.0 270 > th dose independent rect. 20 14
981 101.33 atmosphere 995.0 270 > th dose independent rect. 20 14
996 101.42 humidity 50.0 90 > th dose independent rect. 3 18
999 101.43 humidity 50.0 10 > th dose independent rect. 3 19