BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0229000 Os05g0229000|J013000D22
         (70 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26610.1  | chr5:9375456-9376991 FORWARD LENGTH=302             77   2e-15

>AT5G26610.1 | chr5:9375456-9376991 FORWARD LENGTH=302
          Length = 301

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 1  MNHRPTENLDTEGLEQASVDTQLTSSNIGFRLLQKMGWKGKGLGKNEQA 49
          + HR TEN+D E +EQAS+D +++SSN+GFRLLQKMGWKGKGLGK EQ 
Sbjct: 42 ITHRVTENVDLEDVEQASLDVKISSSNVGFRLLQKMGWKGKGLGKQEQG 90



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,539,221
Number of extensions: 46433
Number of successful extensions: 87
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 11,106,569
Length adjustment: 42
Effective length of query: 28
Effective length of database: 9,955,097
Effective search space: 278742716
Effective search space used: 278742716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)