BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0228000 Os05g0228000|AK064229
         (360 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0228000  Purine and other phosphorylases, family 1 protein   531   e-151
Os01g0229800  Purine and other phosphorylases, family 1 protein   333   1e-91
Os06g0112100  Conserved hypothetical protein                      160   1e-39

>Os05g0228000 Purine and other phosphorylases, family 1 protein
          Length = 360

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/319 (83%), Positives = 266/319 (83%)

Query: 42  RGVRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVII 101
           RGVRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVII
Sbjct: 42  RGVRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVII 101

Query: 102 VMTGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQR 161
           VMTGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQR
Sbjct: 102 VMTGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQR 161

Query: 162 YGDGPEKELALESNGDYTRKYGALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESR 221
           YGDGPEKELALESNGDYTRKYGALNFSDY              WYQPEEVFPADGTPESR
Sbjct: 162 YGDGPEKELALESNGDYTRKYGALNFSDYGVAGGGGGNLLNGVWYQPEEVFPADGTPESR 221

Query: 222 RHEFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFV 281
           RHEFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFV
Sbjct: 222 RHEFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFV 281

Query: 282 DNAAYRQFLRSRLGVTPIDMESXXXXXXXXXXXXPFIAIRSLSDLXXXXXXXXXXXXXXX 341
           DNAAYRQFLRSRLGVTPIDMES            PFIAIRSLSDL               
Sbjct: 282 DNAAYRQFLRSRLGVTPIDMESAAVALVAAQQGAPFIAIRSLSDLAGGGSAESNEAGVFA 341

Query: 342 XXXXXXXXXXXXKFISLLS 360
                       KFISLLS
Sbjct: 342 ALAAQNAVAVAVKFISLLS 360



>Os01g0229800 Purine and other phosphorylases, family 1 protein
          Length = 303

 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/264 (60%), Positives = 189/264 (71%), Gaps = 9/264 (3%)

Query: 64  MEPLLRSPAFSPAKKLP-YLDVAGRRFRFGSIGEKKVIIVMTGLGMLNSGVTTQLLLTLF 122
           M+P+L SP+F+P   LP YLD+ GRRFRFG+IG + V++VMTGL MLN+G+TTQLLL+LF
Sbjct: 1   MDPVLNSPSFTPTPTLPSYLDIQGRRFRFGAIGGQNVVMVMTGLSMLNAGLTTQLLLSLF 60

Query: 123 DVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQRYGDGPEKELALESNGDYTRKY 182
            V+GIVH+GIAGNAD  L IGDVT+P +WAH  LWNWQRYGDGPE EL LE+ GDYTR  
Sbjct: 61  RVKGIVHWGIAGNADEGLQIGDVTIPEHWAHLSLWNWQRYGDGPENELPLEAAGDYTRDL 120

Query: 183 GALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESRRHEFWVPVDGRYYQLAQKLEA 242
           G LNFSDY              W+QPEE+FP  G PE R+H FWVPV  RY+ LA+KLE 
Sbjct: 121 GFLNFSDY-TAAGPSPNELNSIWFQPEEIFPVSGKPEQRQHAFWVPVSSRYFSLAEKLEG 179

Query: 243 MPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFVDNAAYRQFLRSRLGVTPIDME 302
           M L  CVN T       TCL RAP V RV RGCSA+VF+DNAAYRQFLR++ G TP++ME
Sbjct: 180 MELPACVNAT-------TCLPRAPRVTRVRRGCSANVFLDNAAYRQFLRAKFGCTPVEME 232

Query: 303 SXXXXXXXXXXXXPFIAIRSLSDL 326
           S            PF+ IRSLSDL
Sbjct: 233 SAAVALVAHQHAVPFLTIRSLSDL 256



>Os06g0112100 Conserved hypothetical protein
          Length = 343

 Score =  160 bits (406), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 146/283 (51%), Gaps = 26/283 (9%)

Query: 44  VRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVIIVM 103
           V +VNRRG  +G+V+    E   L  S  F P   LP++D+ GRR+  GSI    VI  +
Sbjct: 42  VDKVNRRGHSIGLVMSYIDEATALESSGYFRPWHVLPFVDLYGRRYHIGSIRGVNVIYAL 101

Query: 104 TGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQRYG 163
           TG   LN+ VT Q L+ +F V GIVH+G AG+++  +  GDV+VP++ A+T  W W+++ 
Sbjct: 102 TGQRRLNAAVTVQTLIDVFTVSGIVHYGTAGSSNDSMSFGDVSVPKFVAYTSAWTWKKFK 161

Query: 164 DGPEKELALESNGDYTRKYGALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESRRH 223
              E +  L S GD+T   G  N                   ++ EE++   G P   + 
Sbjct: 162 SPKESDTEL-SFGDFTVPNGGENL-------------LGALKFRNEELYSV-GKP--MKE 204

Query: 224 EFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFVDN 283
            FW+PVD  ++++A+ L+ + LERC        +   CL   P V    +G SA +F+DN
Sbjct: 205 VFWLPVDSAWFKIAEGLK-VSLERC--------NDTFCLPTTPKVVCGLKGSSADMFLDN 255

Query: 284 AAYRQFLRSRLGVTPIDMESXXXXXXXXXXXXPFIAIRSLSDL 326
           A YR+FL    GV+ +D ES            P I  R +SDL
Sbjct: 256 AEYRKFLFREFGVSTVDEESAAVVMTTTSPGIPVIVFRGVSDL 298



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,448,323
Number of extensions: 396716
Number of successful extensions: 839
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)