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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0228000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Purine and other phosphorylases, family 1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0207) R2 : 0.000287
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0158 (0.0436) R2dN8 : 0.00037 R2N8 : 0.000287
σ : 0.39
deviance : 69.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.41 0.38 3.2 0.149 0.216 0.301 0.198 0.947 -0.0595 7.26 91.99 4938 -- --
66.5 0.38 3.2 0.0942 0.177 0.311 0.0926 -- -0.08 7.19 104.2 5710 -- --
65.12 0.376 3.2 0.158 0.18 0.292 -- 1.02 -0.0592 6.98 91.01 5888 -- --
66.51 0.38 3.2 0.0924 0.176 0.321 -- -- -0.0825 6.97 101.1 5734 -- --
66.79 0.381 3.2 0.166 -- 0.291 -- 1.04 -0.0469 -- 91 5798 -- --
67.91 0.386 3.18 0.0667 0.179 -- 0.0414 -- -0.0111 6.93 -- -- -- --
67.92 0.386 3.18 0.0673 0.18 -- -- -- -0.0113 6.83 -- -- -- --
68.13 0.384 3.2 0.0968 -- 0.327 -- -- -0.0805 -- 99.37 5716 -- --
66.73 0.38 3.2 -- 0.177 0.306 -- -- -0.088 6.94 111.4 5730 -- --
69.61 0.39 3.19 0.0713 -- -- -- -- -0.00785 -- -- -- -- --
68.04 0.386 3.19 -- 0.181 -- -- -- -0.0188 6.81 -- -- -- --
68.37 0.385 3.21 -- -- 0.313 -- -- -0.088 -- 104.6 5710 -- --
69.74 0.39 3.19 -- -- -- -- -- -0.0158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.81 wind 1.0 30 < th dose dependent rect. 23 1
17 58.47 wind 1.0 270 < th dose dependent rect. 21 2
19 58.91 wind 1.0 30 < th dose dependent rect. 14 10
23 59.40 wind 1.0 270 < th dose independent rect. 21 2
89 63.54 wind 1.0 30 < th dose independent rect. 23 1
112 63.86 temperature 20.0 10 > th dose dependent rect. 23 1
126 64.14 wind 1.0 30 < th dose dependent sin 18 NA
133 64.42 humidity 90.0 1440 < th dose independent rect. 1 2
135 64.43 wind 1.0 30 < th dose independent rect. 11 13
162 64.64 humidity 80.0 14400 < th dose dependent rect. 4 5
173 64.73 wind 7.0 14400 < th dose independent rect. 9 1
177 64.75 humidity 90.0 90 < th dose independent rect. 2 5
180 64.77 radiation 1.0 10 > th dose dependent rect. 6 2
196 64.83 atmosphere 1010.0 90 < th dose independent rect. 6 1
197 64.83 atmosphere 995.0 90 > th dose independent rect. 7 23
203 64.86 humidity 90.0 1440 > th dose independent rect. 2 1
209 64.88 humidity 70.0 14400 > th dose independent rect. 8 1
213 64.89 wind 1.0 30 < th dose dependent rect. 6 18
223 64.94 humidity 90.0 30 < th dose independent rect. 6 2
224 64.94 humidity 90.0 10 < th dose independent rect. 6 4
234 64.96 humidity 90.0 1440 < th dose dependent rect. 24 3
238 64.99 wind 7.0 14400 > th dose independent rect. 9 1
249 65.02 atmosphere 1010.0 10 < th dose independent rect. 6 2
253 65.03 humidity 70.0 14400 < th dose independent rect. 8 1
254 65.03 atmosphere 995.0 10 > th dose independent rect. 10 20
265 65.05 humidity 70.0 14400 > th dose independent rect. 4 5
269 65.05 humidity 70.0 14400 > th dose independent rect. 24 9
284 65.07 humidity 90.0 10 < th dose dependent rect. 6 2
290 65.08 humidity 70.0 14400 < th dose independent rect. 7 3
294 65.08 wind 7.0 14400 > th dose dependent rect. 9 1
299 65.09 radiation 1.0 90 > th dose independent rect. 6 1
330 65.10 humidity 90.0 90 < th dose dependent rect. 2 5
337 65.11 humidity 80.0 14400 < th dose dependent rect. 23 11
346 65.14 atmosphere 1015.0 90 < th dose dependent rect. 6 1
355 65.16 wind 1.0 30 < th dose independent rect. 6 18
375 65.19 humidity 60.0 4320 > th dose independent rect. 11 1
392 65.22 humidity 90.0 10 < th dose independent rect. 2 8
404 65.23 humidity 80.0 1440 > th dose dependent rect. 2 1
409 65.24 humidity 70.0 4320 < th dose dependent rect. 11 2
413 65.26 radiation 1.0 10 > th dose dependent sin 11 NA
419 65.28 humidity 60.0 4320 < th dose independent rect. 11 1
422 65.29 atmosphere 1015.0 10 < th dose dependent rect. 6 4
426 65.30 temperature 25.0 90 > th dose independent rect. 1 6
428 65.30 temperature 25.0 30 > th dose dependent rect. 6 1
437 65.31 humidity 50.0 4320 > th dose dependent rect. 11 1
442 65.32 humidity 70.0 4320 > th dose independent rect. 4 9
454 65.33 wind 1.0 10 > th dose independent rect. 6 2
477 65.34 humidity 70.0 4320 > th dose independent sin 5 NA
494 65.34 radiation 40.0 10 < th dose independent rect. 8 22
495 65.34 wind 5.0 90 < th dose dependent rect. 6 1
528 65.37 radiation 1.0 10 > th dose independent rect. 6 4
538 65.37 humidity 90.0 4320 < th dose dependent rect. 6 7
562 65.38 humidity 50.0 4320 > th dose dependent rect. 4 9
568 65.39 radiation 20.0 10 > th dose independent rect. 16 18
569 65.39 humidity 50.0 1440 > th dose dependent rect. 1 2
573 65.39 humidity 70.0 4320 > th dose dependent rect. 7 5
600 65.40 temperature 30.0 90 < th dose dependent rect. 6 1
622 65.41 radiation 20.0 10 > th dose independent rect. 7 3
653 65.41 humidity 90.0 10 < th dose dependent rect. 4 4
667 65.42 humidity 70.0 4320 < th dose independent sin 5 NA
669 65.42 precipitation 0.1 14400 < th dose independent rect. 1 17
687 65.42 precipitation 0.1 14400 < th dose dependent rect. 1 17
701 65.43 humidity 70.0 4320 > th dose independent rect. 8 10
706 65.43 precipitation 0.1 14400 > th dose independent rect. 1 17
709 65.43 wind 1.0 14400 < th dose dependent rect. 6 1
731 65.44 humidity 70.0 90 > th dose independent rect. 6 1
755 65.44 humidity 80.0 4320 > th dose dependent rect. 7 2
779 65.45 wind 3.0 90 < th dose independent rect. 6 1
780 65.45 radiation 10.0 30 < th dose independent rect. 6 1
781 65.45 precipitation 0.1 90 < th dose independent rect. 6 1
797 65.45 precipitation 0.1 90 < th dose dependent rect. 6 1
802 65.45 humidity 90.0 10 < th dose dependent rect. 2 6
814 65.45 atmosphere 995.0 30 > th dose dependent rect. 8 22
816 65.46 radiation 10.0 90 > th dose independent sin 11 NA
820 65.46 temperature 10.0 90 > th dose independent rect. 6 1
822 65.46 temperature 30.0 90 < th dose independent rect. 6 1
823 65.46 humidity 50.0 90 > th dose independent rect. 6 1
825 65.46 atmosphere 995.0 90 > th dose independent rect. 6 1
827 65.46 radiation 20.0 720 > th dose independent rect. 7 1
834 65.46 wind 1.0 10 > th dose independent rect. 6 4
860 65.46 temperature 10.0 90 > th dose independent rect. 7 23
894 65.47 wind 5.0 720 < th dose independent rect. 18 10
896 65.47 humidity 70.0 4320 < th dose independent rect. 8 10
907 65.47 humidity 50.0 4320 > th dose dependent sin 4 NA
908 65.47 humidity 50.0 14400 > th dose dependent rect. 8 1
927 65.48 wind 1.0 90 > th dose independent sin 18 NA
930 65.48 wind 5.0 14400 < th dose independent rect. 11 1
961 65.48 humidity 80.0 4320 < th dose dependent rect. 21 17
996 65.49 humidity 70.0 4320 > th dose independent rect. 16 20