BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0228000 Os05g0228000|AK064229
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28940.1 | chr4:14274414-14276920 FORWARD LENGTH=349 337 6e-93
AT4G24340.1 | chr4:12607475-12609148 FORWARD LENGTH=339 186 2e-47
AT4G24350.1 | chr4:12609637-12611328 FORWARD LENGTH=337 184 4e-47
>AT4G28940.1 | chr4:14274414-14276920 FORWARD LENGTH=349
Length = 348
Score = 337 bits (864), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 200/283 (70%), Gaps = 11/283 (3%)
Query: 44 VRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVIIVM 103
+ ++N++GPYLG+V PN +E+ PLL S A+ P+ LP++D AGR+FRFG + + VIIVM
Sbjct: 34 IERMNQKGPYLGIVAPNNYELNPLLGSKAYFPSSSLPFIDFAGRKFRFGKLSNQPVIIVM 93
Query: 104 TGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQRYG 163
+GLGM+N+GVTTQLL++LF ++G++H+GIAGNAD +L IGDVT+P+YWAH+GLWNWQRYG
Sbjct: 94 SGLGMVNAGVTTQLLVSLFRLKGVLHYGIAGNADVNLEIGDVTIPQYWAHSGLWNWQRYG 153
Query: 164 DGPEKELALESNGDYTRKYGALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESRRH 223
DG + ELALES GDYTR+ G L FS Y WYQPEE+FP GTPE R+H
Sbjct: 154 DGIDNELALESGGDYTREVGYLQFSKY---SNRTDNLLNRVWYQPEEIFPVTGTPEERQH 210
Query: 224 EFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFVDN 283
FW+PVD Y +LA+KLE L +CVN TCL R P V V+RG SASVF+DN
Sbjct: 211 VFWIPVDKSYLKLARKLEDTKLPQCVN--------TTCLPRPPKVTIVKRGMSASVFIDN 262
Query: 284 AAYRQFLRSRLGVTPIDMESXXXXXXXXXXXXPFIAIRSLSDL 326
AAYR FL S+ T ++MES PFI IR+LSDL
Sbjct: 263 AAYRTFLNSKFNATAVEMESAAVALISHQQNLPFIVIRALSDL 305
>AT4G24340.1 | chr4:12607475-12609148 FORWARD LENGTH=339
Length = 338
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 142/284 (50%), Gaps = 22/284 (7%)
Query: 44 VRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVIIVM 103
+R++NRRGPY+G+V E + L S F P+LD++GRRFR G I KKV+ V
Sbjct: 43 IRKINRRGPYIGLVTVFETEEDAFLGSVDFRLDPTHPFLDLSGRRFRIGKIHGKKVVYVR 102
Query: 104 TGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQRYG 163
G+GM+N+ TQ ++ +F V+GIVHFGIAGN + + IGDV++P+ + GLW+W G
Sbjct: 103 CGIGMVNAAAATQQMIDVFSVKGIVHFGIAGNINNSMSIGDVSIPKQITNAGLWDWLNPG 162
Query: 164 DGPEKE-LALESNGDYTRKYGALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESRR 222
E +A G+Y G Y EE++ G S +
Sbjct: 163 KAKGNEDVAYLDVGNYNVPQG--------------NNKLGTIGYSYEELYSVSGHINSPK 208
Query: 223 HEFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFVD 282
FW+ + LA LE M L +CVN + CL P V + +A +FVD
Sbjct: 209 KVFWINTTQEWLHLAADLEKMELLQCVN-------ASLCLPNKPKVVVGLKAATADIFVD 261
Query: 283 NAAYRQFLRSRLGVTPIDMESXXXXXXXXXXXXPFIAIRSLSDL 326
NAAYR FL GV+ DMES P I IR LSDL
Sbjct: 262 NAAYRNFLYDTFGVSSSDMESSAVAMTCVSNGYPLIVIRGLSDL 305
>AT4G24350.1 | chr4:12609637-12611328 FORWARD LENGTH=337
Length = 336
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 144/283 (50%), Gaps = 18/283 (6%)
Query: 44 VRQVNRRGPYLGVVVPNGFEMEPLLRSPAFSPAKKLPYLDVAGRRFRFGSIGEKKVIIVM 103
+R++NR GPY+G+V E LRS F P P+LD++GRRFR G I KKV+ V
Sbjct: 38 IRKLNRGGPYIGLVTVIATEENAFLRSVDFRPDPTHPFLDLSGRRFRIGKIHGKKVVYVR 97
Query: 104 TGLGMLNSGVTTQLLLTLFDVEGIVHFGIAGNADPDLHIGDVTVPRYWAHTGLWNWQRYG 163
G GM+N TQ ++ +F+V+GIVHFGIAGN + + IGDV++P+ + GLW+W
Sbjct: 98 CGRGMVNGAAATQQMIDVFNVKGIVHFGIAGNMNNSMSIGDVSIPKQITNAGLWDWLN-- 155
Query: 164 DGPEKELALESNGDYTRKYGALNFSDYXXXXXXXXXXXXXXWYQPEEVFPADGTPESRRH 223
P+K +E L+ +Y Y E+++ G + ++
Sbjct: 156 --PDKVKGVED-------IAYLDVGNYNVPKGDGDNELGSIGYNYEQLYSVTGHINAPQN 206
Query: 224 EFWVPVDGRYYQLAQKLEAMPLERCVNRTGTATSPATCLARAPAVARVERGCSASVFVDN 283
FW+ + LA LE M L +CVN + CL + P + + +A +FVDN
Sbjct: 207 VFWINTTQEWLHLAADLEKMELSQCVN-------ASLCLPKKPKLVVGLKAATAYIFVDN 259
Query: 284 AAYRQFLRSRLGVTPIDMESXXXXXXXXXXXXPFIAIRSLSDL 326
AAYR FL GV+ DMES P I IR LSDL
Sbjct: 260 AAYRNFLYDTFGVSSSDMESSAVAMTCASNGYPIIVIRGLSDL 302
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,865,844
Number of extensions: 236952
Number of successful extensions: 370
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)