BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0220100 Os05g0220100|AK122045
         (349 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0220100  Per1-like family protein                            657   0.0  
Os10g0524100  Per1-like family protein                            393   e-109

>Os05g0220100 Per1-like family protein
          Length = 349

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/349 (90%), Positives = 317/349 (90%)

Query: 1   MAGCXXXXXXXXXXXXXXXXXXXXXDASLGDVDPQYRTCVEECHTTGIIGENIISHCQSP 60
           MAGC                     DASLGDVDPQYRTCVEECHTTGIIGENIISHCQSP
Sbjct: 1   MAGCGGGWVARLAALLVVGFVLGSVDASLGDVDPQYRTCVEECHTTGIIGENIISHCQSP 60

Query: 61  GNDDASVGSSWYTQEPLYMQWKQLNCMNDCRYYCMMQREGERQSRGLNPVKYHGKWPFIR 120
           GNDDASVGSSWYTQEPLYMQWKQLNCMNDCRYYCMMQREGERQSRGLNPVKYHGKWPFIR
Sbjct: 61  GNDDASVGSSWYTQEPLYMQWKQLNCMNDCRYYCMMQREGERQSRGLNPVKYHGKWPFIR 120

Query: 121 VSVFQEPLSAALSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSM 180
           VSVFQEPLSAALSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSM
Sbjct: 121 VSVFQEPLSAALSAVNLLMHFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSM 180

Query: 181 NAWFWSSIFHTRDIDLTEKLDYSSAVAXXXXXXXXXXXRTFNVKDEATRVMFAAPILAFV 240
           NAWFWSSIFHTRDIDLTEKLDYSSAVA           RTFNVKDEATRVMFAAPILAFV
Sbjct: 181 NAWFWSSIFHTRDIDLTEKLDYSSAVALLGYSLILSLLRTFNVKDEATRVMFAAPILAFV 240

Query: 241 TTHILYLNFYELDYGWNMKVCVVMAVVQLLAWAIWAGITQHPSRFKLWVVVFGGALAMLL 300
           TTHILYLNFYELDYGWNMKVCVVMAVVQLLAWAIWAGITQHPSRFKLWVVVFGGALAMLL
Sbjct: 241 TTHILYLNFYELDYGWNMKVCVVMAVVQLLAWAIWAGITQHPSRFKLWVVVFGGALAMLL 300

Query: 301 EVYDFPPYKGYADAHSLWHASTIPLTYLWWSFIKDDAEFRTSTLIKKAK 349
           EVYDFPPYKGYADAHSLWHASTIPLTYLWWSFIKDDAEFRTSTLIKKAK
Sbjct: 301 EVYDFPPYKGYADAHSLWHASTIPLTYLWWSFIKDDAEFRTSTLIKKAK 349



>Os10g0524100 Per1-like family protein
          Length = 347

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/322 (59%), Positives = 232/322 (72%), Gaps = 1/322 (0%)

Query: 28  SLGDVDPQYRTCVEECHTTGIIGENIISHCQSPGNDDASVGSSWYTQEPLYMQWKQLNCM 87
           S GD DP YR CV+EC  TG + E  + HCQ P  DD     SWY  EPLY+QWK+ NC 
Sbjct: 27  SEGDADPLYRACVDECEKTGSLRETSVRHCQVP-TDDHPADKSWYAHEPLYLQWKEWNCK 85

Query: 88  NDCRYYCMMQREGERQSRGLNPVKYHGKWPFIRVSVFQEPLSAALSAVNLLMHFTGWLSF 147
           ++CRY+CMM+RE ER+  GL  VKYHGKWP  R SVFQEP+SAALSA++LL+ F GWLSF
Sbjct: 86  SECRYHCMMERESEREQLGLGSVKYHGKWPMKRASVFQEPISAALSALSLLVQFNGWLSF 145

Query: 148 FLLVNYKLPVRPQTKRTYYEYTGLWHIYAILSMNAWFWSSIFHTRDIDLTEKLDYSSAVA 207
           FLL++YKLP+RP+T+ TYYEYTGLWHIY +L+MNAWFW +I+H+ D   TEKL YSS  A
Sbjct: 146 FLLLSYKLPLRPETQMTYYEYTGLWHIYGLLAMNAWFWRAIYHSCDTVWTEKLYYSSFAA 205

Query: 208 XXXXXXXXXXXRTFNVKDEATRVMFAAPILAFVTTHILYLNFYELDYGWNMKVCVVMAVV 267
                      RT N+KDEA+RVM AAPILAF TTHILYLNFYELD G N KVC   ++ 
Sbjct: 206 FIGYSLILAILRTLNLKDEASRVMVAAPILAFTTTHILYLNFYELDKGLNTKVCTAASLA 265

Query: 268 QLLAWAIWAGITQHPSRFKLWVVVFGGALAMLLEVYDFPPYKGYADAHSLWHASTIPLTY 327
           Q L WA+WA +T+HPS FK+  V+ G   +++LE YD PP  GY D      A +IPLTY
Sbjct: 266 QFLLWAVWAVMTKHPSCFKILFVIIGNVFSIVLETYDIPPRWGYVDGRVFCVAISIPLTY 325

Query: 328 LWWSFIKDDAEFRTSTLIKKAK 349
           LWW F K+DAE RTST+IKK +
Sbjct: 326 LWWKFAKEDAEMRTSTIIKKTR 347



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,279,633
Number of extensions: 449456
Number of successful extensions: 882
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)