Os10g0524100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Per1-like family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0524100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Per1-like family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.78 | 0.243 | 12.6 | -0.117 | 0.628 | 0.488 | 0.442 | -0.321 | -0.232 | 23.2 | 1004 | 15 | -- | -- |
| 26.93 | 0.242 | 12.6 | -0.124 | 0.626 | 0.491 | 0.454 | -- | -0.23 | 23.2 | 1004 | 13 | -- | -- |
| 27.6 | 0.245 | 12.6 | -0.132 | 0.628 | 0.497 | -- | -0.368 | -0.235 | 23.2 | 1004 | 11 | -- | -- |
| 27.81 | 0.246 | 12.6 | -0.142 | 0.625 | 0.505 | -- | -- | -0.234 | 23.1 | 1004 | 13 | -- | -- |
| 51.82 | 0.337 | 12.6 | -0.122 | -- | 0.442 | -- | -0.281 | -0.22 | -- | 1003 | 5 | -- | -- |
| 30.58 | 0.259 | 12.6 | -0.134 | 0.613 | -- | 0.5 | -- | -0.142 | 23.4 | -- | -- | -- | -- |
| 31.65 | 0.263 | 12.6 | -0.154 | 0.61 | -- | -- | -- | -0.144 | 23.3 | -- | -- | -- | -- |
| 51.94 | 0.337 | 12.6 | -0.129 | -- | 0.443 | -- | -- | -0.218 | -- | 1003 | 5 | -- | -- |
| 28.33 | 0.248 | 12.6 | -- | 0.625 | 0.509 | -- | -- | -0.219 | 23.1 | 1004 | 13 | -- | -- |
| 54.99 | 0.347 | 12.6 | -0.138 | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
| 32.28 | 0.266 | 12.6 | -- | 0.609 | -- | -- | -- | -0.127 | 23.3 | -- | -- | -- | -- |
| 52.37 | 0.338 | 12.6 | -- | -- | 0.448 | -- | -- | -0.205 | -- | 1003 | 5 | -- | -- |
| 55.5 | 0.348 | 12.6 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 13 | 24.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 29 | 24.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 34 | 24.85 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 46 | 24.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 88 | 25.30 | temperature | 10 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 133 | 25.52 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 140 | 25.56 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 1 | 15 |
| 158 | 25.65 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 172 | 25.70 | temperature | 10 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 226 | 25.87 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 246 | 25.90 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 271 | 25.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 296 | 26.06 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 317 | 26.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 333 | 26.15 | temperature | 30 | 30 | < th | dose independent | rect. | 6 | 19 |
| 343 | 26.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 345 | 26.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 363 | 26.21 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 365 | 26.21 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 13 |
| 389 | 26.26 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 23 | 20 |
| 401 | 26.28 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 431 | 26.33 | wind | 7 | 30 | < th | dose independent | rect. | 1 | 16 |
| 454 | 26.35 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 1 | 5 |
| 463 | 26.36 | radiation | 30 | 90 | < th | dose independent | rect. | 6 | 19 |
| 472 | 26.37 | temperature | 15 | 90 | > th | dose independent | rect. | 1 | 16 |
| 477 | 26.38 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 482 | 26.38 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 485 | 26.39 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 488 | 26.39 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 492 | 26.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 498 | 26.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 20 |
| 529 | 26.44 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 5 | 7 |
| 537 | 26.45 | wind | 1 | 30 | > th | dose independent | rect. | 6 | 19 |
| 549 | 26.45 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 579 | 26.50 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 9 | 19 |
| 586 | 26.50 | radiation | 40 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 596 | 26.52 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 602 | 26.52 | radiation | 40 | 30 | < th | dose dependent | rect. | 8 | 17 |
| 669 | 26.57 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 24 | 23 |
| 686 | 26.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 709 | 26.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 714 | 26.60 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 20 |
| 717 | 26.60 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 5 | NA |
| 737 | 26.62 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 761 | 26.64 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 21 |
| 770 | 26.64 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 773 | 26.64 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 811 | 26.66 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 830 | 26.68 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 15 |
| 837 | 26.68 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 846 | 26.69 | radiation | 40 | 10 | < th | dose dependent | rect. | 10 | 15 |
| 864 | 26.70 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 9 |
| 879 | 26.71 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 5 |
| 884 | 26.71 | radiation | 10 | 30 | < th | dose dependent | rect. | 1 | 6 |
| 898 | 26.72 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 19 |
| 914 | 26.72 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 949 | 26.74 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 5 |
| 952 | 26.74 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 998 | 26.75 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |