Os05g0220100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Per1-like family protein.
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Os05g0220100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Per1-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.58 | 0.422 | 8.19 | 2.06 | 0.739 | 0.892 | 0.946 | -1.5 | 0.409 | 23.5 | 89.1 | 261 | -- | -- |
| 84.82 | 0.429 | 8.18 | 2.01 | 0.725 | 0.866 | 0.853 | -- | 0.396 | 23.1 | 88.25 | 253 | -- | -- |
| 84.18 | 0.427 | 8.19 | 2.02 | 0.76 | 0.902 | -- | -1.37 | 0.409 | 23.7 | 89.01 | 296 | -- | -- |
| 87.26 | 0.435 | 8.17 | 1.97 | 0.683 | 0.798 | -- | -- | 0.392 | 23.6 | 88.41 | 212 | -- | -- |
| 108.84 | 0.486 | 8.15 | 1.97 | -- | 0.935 | -- | -0.16 | 0.452 | -- | 86.59 | 61 | -- | -- |
| 99.45 | 0.468 | 8.2 | 2.09 | 0.883 | -- | 0.681 | -- | 0.262 | 1.22 | -- | -- | -- | -- |
| 101.26 | 0.471 | 8.2 | 2.06 | 0.886 | -- | -- | -- | 0.258 | 1.41 | -- | -- | -- | -- |
| 108.89 | 0.486 | 8.15 | 1.98 | -- | 0.885 | -- | -- | 0.432 | -- | 84.34 | 59 | -- | -- |
| 186.93 | 0.637 | 8.22 | -- | 0.746 | 1.1 | -- | -- | 0.218 | 22.8 | 87.53 | 276 | -- | -- |
| 149.52 | 0.571 | 8.19 | 2.1 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 213.5 | 0.684 | 8.25 | -- | 0.922 | -- | -- | -- | 0.0278 | 1.49 | -- | -- | -- | -- |
| 209.52 | 0.674 | 8.19 | -- | -- | 1.09 | -- | -- | 0.257 | -- | 86.92 | 51 | -- | -- |
| 265.69 | 0.761 | 8.24 | -- | -- | -- | -- | -- | 0.0435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 70.40 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 10 | 71.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 13 | 71.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 17 | 72.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 20 | 72.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 23 | 72.69 | temperature | 25.0 | 270 | < th | dose independent | sin | 9 | NA |
| 31 | 72.90 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 48 | 73.79 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 74 | 74.66 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 75 | 74.69 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 83 | 74.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 109 | 75.62 | temperature | 25.0 | 270 | > th | dose independent | sin | 9 | NA |
| 129 | 76.06 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 137 | 76.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 138 | 76.12 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 139 | 76.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 146 | 76.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 165 | 76.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 186 | 76.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 196 | 76.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 209 | 76.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 226 | 76.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 227 | 76.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 233 | 76.98 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 235 | 77.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 237 | 77.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 266 | 77.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 298 | 77.51 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 306 | 77.56 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 323 | 77.64 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 335 | 77.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 345 | 77.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 348 | 77.80 | radiation | 1.0 | 270 | > th | dose independent | sin | 4 | NA |
| 351 | 77.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 354 | 77.81 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 360 | 77.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 20 |
| 385 | 77.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 398 | 78.07 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 413 | 78.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 438 | 78.25 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 448 | 78.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 451 | 78.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 454 | 78.35 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 457 | 78.35 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 458 | 78.35 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 459 | 78.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 463 | 78.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 477 | 78.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 490 | 78.48 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 504 | 78.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 506 | 78.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 510 | 78.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 512 | 78.55 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 518 | 78.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 522 | 78.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 528 | 78.62 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 536 | 78.67 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 588 | 78.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 623 | 78.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 644 | 79.06 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 649 | 79.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 657 | 79.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 663 | 79.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 732 | 79.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 769 | 79.44 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 776 | 79.45 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 812 | 79.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 814 | 79.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 818 | 79.56 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 868 | 79.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 870 | 79.69 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 876 | 79.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 878 | 79.71 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 880 | 79.72 | wind | 5.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 888 | 79.74 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 893 | 79.75 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 909 | 79.79 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 8 |
| 921 | 79.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 923 | 79.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 947 | 79.87 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 18 |
| 984 | 79.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 9 |