BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0215600 Os05g0215600|AK066642
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0215600 Conserved hypothetical protein 514 e-146
Os04g0613300 Conserved hypothetical protein 168 5e-42
>Os05g0215600 Conserved hypothetical protein
Length = 300
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/300 (86%), Positives = 259/300 (86%)
Query: 1 MGLLVHLPNLAGARRPSPCXXXXXXXXXXXFSVSAAAPGGGVKXXXXXXXXXXXKGTRGK 60
MGLLVHLPNLAGARRPSPC FSVSAAAPGGGVK KGTRGK
Sbjct: 1 MGLLVHLPNLAGARRPSPCGGHRRARGGARFSVSAAAPGGGVKEEEEEEEEEEEKGTRGK 60
Query: 61 ERIVIRVSDPVRERRLPPPLFSSPDAPSPAAXXXXXXXXXXXXXXXXXXXYHVNVGDAIR 120
ERIVIRVSDPVRERRLPPPLFSSPDAPSPAA YHVNVGDAIR
Sbjct: 61 ERIVIRVSDPVRERRLPPPLFSSPDAPSPAAGRRRRKGEDEDDGEDRRRRYHVNVGDAIR 120
Query: 121 ALREELPAAFYREPSFHIYRDDIVFKDPINNFTGIDNYKRIFWALRFTGQIFFKALWIDI 180
ALREELPAAFYREPSFHIYRDDIVFKDPINNFTGIDNYKRIFWALRFTGQIFFKALWIDI
Sbjct: 121 ALREELPAAFYREPSFHIYRDDIVFKDPINNFTGIDNYKRIFWALRFTGQIFFKALWIDI 180
Query: 181 ISIWQPVEDVIMIRWIVHGIPRVLSDGPGRFEGTSEYKFDKNGKIYEHKVDNVAKNTPTK 240
ISIWQPVEDVIMIRWIVHGIPRVLSDGPGRFEGTSEYKFDKNGKIYEHKVDNVAKNTPTK
Sbjct: 181 ISIWQPVEDVIMIRWIVHGIPRVLSDGPGRFEGTSEYKFDKNGKIYEHKVDNVAKNTPTK 240
Query: 241 FKVLPVVELIRSLGCPSTPKPTYFETSSLQLISLLPFWFKLTWMRCYLSLYLILANLSKG 300
FKVLPVVELIRSLGCPSTPKPTYFETSSLQLISLLPFWFKLTWMRCYLSLYLILANLSKG
Sbjct: 241 FKVLPVVELIRSLGCPSTPKPTYFETSSLQLISLLPFWFKLTWMRCYLSLYLILANLSKG 300
>Os04g0613300 Conserved hypothetical protein
Length = 281
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 107/155 (69%)
Query: 111 YHVNVGDAIRALREELPAAFYREPSFHIYRDDIVFKDPINNFTGIDNYKRIFWALRFTGQ 170
Y++N+G A+R LR++LPA F REP++ IYR+DI F DP+N F GIDNYK IFWALRF G+
Sbjct: 86 YYLNLGTAVRTLRDDLPAVFVREPNYDIYREDITFVDPLNTFHGIDNYKTIFWALRFHGR 145
Query: 171 IFFKALWIDIISIWQPVEDVIMIRWIVHGIPRVLSDGPGRFEGTSEYKFDKNGKIYEHKV 230
+ F+ + +DI IWQ E+ I++RW + G PRV + G F GTS YK D+NGKIYEHKV
Sbjct: 146 LLFREIGLDISRIWQLTENSIVVRWELWGTPRVPWESYGCFSGTSRYKVDRNGKIYEHKV 205
Query: 231 DNVAKNTPTKFKVLPVVELIRSLGCPSTPKPTYFE 265
DN+A + P + + I CP +P T+++
Sbjct: 206 DNLALDFPRPAAKVGSIADIVVASCPPSPNLTFWD 240
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.142 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,280,221
Number of extensions: 423518
Number of successful extensions: 979
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 976
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)