Os05g0215600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0215600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.04 | 0.352 | 12.7 | -0.597 | 0.438 | -1.14 | -0.684 | 1.47 | -0.165 | 7.65 | 20.12 | 407 | -- | -- |
| 57.49 | 0.353 | 12.7 | -0.901 | 0.456 | -1.02 | -0.944 | -- | -0.255 | 7.55 | 20.21 | 413 | -- | -- |
| 56.36 | 0.35 | 12.6 | -0.5 | 0.466 | -1.12 | -- | 2.04 | -0.143 | 6.54 | 20.23 | 497 | -- | -- |
| 59.6 | 0.36 | 12.7 | -0.932 | 0.493 | -0.957 | -- | -- | -0.263 | 6.76 | 20.13 | 449 | -- | -- |
| 63.13 | 0.37 | 12.6 | -0.3 | -- | -1.51 | -- | 2.87 | -0.0484 | -- | 22.06 | 465 | -- | -- |
| 75.61 | 0.408 | 12.7 | -1.15 | 0.847 | -- | -0.478 | -- | -0.436 | 6.62 | -- | -- | -- | -- |
| 76.13 | 0.409 | 12.7 | -1.16 | 0.847 | -- | -- | -- | -0.435 | 6.5 | -- | -- | -- | -- |
| 67.33 | 0.382 | 12.7 | -0.929 | -- | -1.23 | -- | -- | -0.295 | -- | 24.81 | 446 | -- | -- |
| 71.76 | 0.395 | 12.6 | -- | 0.948 | -1.3 | -- | -- | 0.00745 | 6.39 | 14.94 | 8359 | -- | -- |
| 113.42 | 0.498 | 12.7 | -1.14 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 111.55 | 0.494 | 12.7 | -- | 0.832 | -- | -- | -- | -0.306 | 6.58 | -- | -- | -- | -- |
| 86.72 | 0.434 | 12.6 | -- | -- | -1.4 | -- | -- | -0.0288 | -- | 20.4 | 488 | -- | -- |
| 147.58 | 0.567 | 12.7 | -- | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.62 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 7 | 45.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 9 | 45.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 52 | 48.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 63 | 48.78 | radiation | 1.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 65 | 48.82 | radiation | 1.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 66 | 48.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 71 | 49.01 | radiation | 1.0 | 270 | > th | dose independent | sin | 15 | NA |
| 72 | 49.05 | radiation | 1.0 | 270 | < th | dose independent | sin | 16 | NA |
| 77 | 49.14 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 81 | 49.16 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 82 | 49.17 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 114 | 49.57 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 116 | 49.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 120 | 49.66 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 135 | 49.80 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 139 | 49.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 155 | 49.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 164 | 50.05 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 170 | 50.10 | wind | 3.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 200 | 50.52 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 242 | 50.82 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 243 | 50.84 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 249 | 50.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 261 | 50.91 | temperature | 20.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 276 | 51.02 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 344 | 51.39 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 358 | 51.46 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 391 | 51.64 | wind | 1.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 412 | 51.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 458 | 52.10 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 464 | 52.14 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 465 | 52.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 466 | 52.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 474 | 52.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 476 | 52.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 483 | 52.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 493 | 52.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 497 | 52.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 539 | 52.55 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 551 | 52.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 5 |
| 553 | 52.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 555 | 52.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 560 | 52.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 561 | 52.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 564 | 52.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 565 | 52.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 572 | 52.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 596 | 52.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 635 | 52.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 638 | 52.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 643 | 52.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 644 | 52.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 645 | 52.95 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 654 | 52.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 679 | 53.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 684 | 53.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 699 | 53.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 715 | 53.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 731 | 53.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 738 | 53.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 739 | 53.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 740 | 53.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 741 | 53.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 746 | 53.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 748 | 53.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 778 | 53.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 806 | 53.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 808 | 53.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 843 | 53.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 845 | 53.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 855 | 53.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 873 | 53.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 917 | 53.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 936 | 53.86 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 968 | 53.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 979 | 54.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 998 | 54.05 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |