Os04g0613300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0613300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.04 | 0.39 | 12.3 | -0.0666 | 1.55 | 0.7 | 1.18 | 0.222 | -0.33 | 7.35 | 2.506 | 77 | -- | -- |
| 69.27 | 0.388 | 12.3 | -0.0588 | 1.54 | 0.687 | 1.29 | -- | -0.326 | 7.42 | 2.5 | 77 | -- | -- |
| 72.12 | 0.396 | 12.3 | -0.0608 | 1.52 | 0.711 | -- | 0.546 | -0.341 | 7.28 | 2.461 | 67 | -- | -- |
| 73.97 | 0.401 | 12.3 | -0.0392 | 1.54 | 0.691 | -- | -- | -0.334 | 7.37 | 2.5 | 78 | -- | -- |
| 160.8 | 0.594 | 12.4 | -0.062 | -- | 1.07 | -- | 0.429 | -0.279 | -- | 1 | 33 | -- | -- |
| 78.3 | 0.415 | 12.3 | -0.0737 | 1.92 | -- | 1.08 | -- | -0.276 | 8.95 | -- | -- | -- | -- |
| 82.32 | 0.425 | 12.3 | -0.0366 | 1.91 | -- | -- | -- | -0.275 | 8.95 | -- | -- | -- | -- |
| 162 | 0.595 | 12.4 | -0.067 | -- | 1.08 | -- | -- | -0.281 | -- | 1 | 33 | -- | -- |
| 73.99 | 0.401 | 12.3 | -- | 1.56 | 0.674 | -- | -- | -0.324 | 7.4 | 2.58 | 78 | -- | -- |
| 291.97 | 0.798 | 12.4 | -0.038 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 82.36 | 0.425 | 12.3 | -- | 1.91 | -- | -- | -- | -0.271 | 8.95 | -- | -- | -- | -- |
| 162.12 | 0.595 | 12.4 | -- | -- | 1.08 | -- | -- | -0.274 | -- | 1 | 33 | -- | -- |
| 292.01 | 0.798 | 12.3 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.49 | radiation | 1.0 | 30 | > th | dose independent | rect. | 17 | 23 |
| 2 | 68.98 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 3 | 69.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 4 | 69.09 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 11 | 69.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 18 | 69.67 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 10 |
| 20 | 69.68 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 25 | 69.85 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 26 | 69.87 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 10 | 15 |
| 29 | 69.91 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 32 | 69.92 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 37 | 69.95 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 19 |
| 43 | 70.02 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 44 | 70.04 | humidity | 60.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 48 | 70.06 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 59 | 70.13 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 62 | 70.15 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 68 | 70.17 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 69 | 70.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 71 | 70.18 | humidity | 60.0 | 270 | > th | dose independent | rect. | 24 | 20 |
| 72 | 70.18 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 81 | 70.23 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 83 | 70.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 87 | 70.25 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 88 | 70.26 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 98 | 70.30 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 99 | 70.30 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 100 | 70.30 | radiation | 1.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 110 | 70.32 | radiation | 1.0 | 30 | > th | dose independent | sin | 0 | NA |
| 111 | 70.32 | radiation | 1.0 | 30 | < th | dose independent | sin | 0 | NA |
| 114 | 70.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 24 | 18 |
| 115 | 70.35 | radiation | 1.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 121 | 70.38 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 20 |
| 124 | 70.40 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 14 |
| 131 | 70.42 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 138 | 70.44 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 151 | 70.46 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 5 |
| 153 | 70.46 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 167 | 70.47 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 177 | 70.49 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 17 |
| 186 | 70.50 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 205 | 70.53 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 213 | 70.54 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 228 | 70.57 | humidity | 70.0 | 10 | > th | dose independent | rect. | 12 | 9 |
| 240 | 70.60 | humidity | 70.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 258 | 70.64 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 261 | 70.64 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 269 | 70.66 | humidity | 90.0 | 10 | < th | dose dependent | sin | 21 | NA |
| 271 | 70.67 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 294 | 70.70 | humidity | 70.0 | 10 | > th | dose independent | rect. | 1 | 22 |
| 296 | 70.70 | precipitation | 0.1 | 270 | > th | dose dependent | no | NA | NA |
| 314 | 70.72 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 315 | 70.73 | humidity | 70.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 319 | 70.73 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 339 | 70.77 | humidity | 70.0 | 10 | > th | dose independent | rect. | 9 | 12 |
| 341 | 70.77 | humidity | 50.0 | 10 | > th | dose dependent | no | NA | NA |
| 343 | 70.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 12 |
| 347 | 70.78 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 359 | 70.79 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 364 | 70.79 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 378 | 70.81 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 385 | 70.83 | wind | 5.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 387 | 70.83 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 6 | 22 |
| 388 | 70.83 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 389 | 70.83 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 392 | 70.83 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 397 | 70.84 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 20 |
| 404 | 70.85 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 406 | 70.85 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 408 | 70.86 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 16 |
| 412 | 70.86 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 421 | 70.87 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 430 | 70.89 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 436 | 70.89 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 21 |
| 446 | 70.91 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 447 | 70.91 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 449 | 70.91 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 494 | 70.91 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 515 | 70.93 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 516 | 70.93 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 525 | 70.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 531 | 70.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 535 | 70.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 549 | 70.97 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 550 | 70.97 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 553 | 70.97 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 20 | 23 |
| 559 | 70.98 | humidity | 70.0 | 10 | > th | dose independent | rect. | 1 | 20 |
| 573 | 70.99 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 578 | 71.00 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 19 |
| 593 | 71.02 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 597 | 71.02 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 598 | 71.02 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 602 | 71.03 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 611 | 71.04 | wind | 5.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 649 | 71.08 | temperature | 25.0 | 30 | > th | dose independent | rect. | 21 | 21 |
| 703 | 71.14 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 708 | 71.14 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 9 | 9 |
| 726 | 71.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 735 | 71.16 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 12 |
| 750 | 71.17 | humidity | 50.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 755 | 71.18 | humidity | 70.0 | 10 | > th | dose independent | rect. | 12 | 11 |
| 769 | 71.20 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 775 | 71.20 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 796 | 71.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 860 | 71.23 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 861 | 71.23 | humidity | 90.0 | 10 | < th | dose dependent | no | NA | NA |
| 898 | 71.26 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 930 | 71.29 | temperature | 25.0 | 10 | < th | dose independent | rect. | 24 | 11 |
| 944 | 71.30 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |