BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0613300 Os04g0613300|AK065653
         (281 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16320.1  | chr1:5580951-5581932 FORWARD LENGTH=274            241   4e-64
AT1G79510.1  | chr1:29908271-29909175 REVERSE LENGTH=276          238   4e-63
AT2G46220.1  | chr2:18979655-18980557 FORWARD LENGTH=242          191   3e-49

>AT1G16320.1 | chr1:5580951-5581932 FORWARD LENGTH=274
          Length = 273

 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 143/197 (72%), Gaps = 4/197 (2%)

Query: 85  DYYLNLGTAVRTLRDDLPAVFVREPNYDIYREDITFVDPLNTFHGIDNYKTIFWALRFHG 144
           ++Y+NLG AVRTLR+DLP +F R+ NYDIYR+DITFVDP+NTF G+DNYK IFWALRFHG
Sbjct: 81  EFYINLGVAVRTLREDLPLLFTRDLNYDIYRDDITFVDPMNTFTGMDNYKIIFWALRFHG 140

Query: 145 RLLFREIGLDISRIWQLTENSIVVRWELWGTPRVPWESYGCFSGTSRYKVDRNGKIYEHK 204
           ++LFR+I L+I R+WQ +EN I++RW L G PRVPWE+ G F GTSRYK+DRNGKIYEHK
Sbjct: 141 KILFRDISLEIFRVWQPSENMILIRWNLKGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHK 200

Query: 205 VDNLALDFPRPAAKVGSIADIVVASCPPSPNLTFWDMVGSTGDGCSWANLYQAVVETVER 264
           VDNLA +FP+      S+ D+V AS   SPN TF+          SW   YQAV  T+E 
Sbjct: 201 VDNLAFNFPQQLKPAASVLDLVTASPASSPNPTFF-FSPVDSYSSSWVKFYQAVRGTLET 259

Query: 265 EGNDPAGIAIEGLLTCS 281
           E      +  + L+TCS
Sbjct: 260 ED---MFVTTDCLVTCS 273



>AT1G79510.1 | chr1:29908271-29909175 REVERSE LENGTH=276
          Length = 275

 Score =  238 bits (606), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 138/182 (75%), Gaps = 4/182 (2%)

Query: 85  DYYLNLGTAVRTLRDDLPAVFVREPNYDIYREDITFVDPLNTFHGIDNYKTIFWALRFHG 144
           D+Y+NLG AVRTLR+DLP +F ++ NYDIYR+DIT VDP+NTF GIDNYK IFWALRFHG
Sbjct: 83  DFYINLGLAVRTLREDLPLLFTKDLNYDIYRDDITLVDPMNTFSGIDNYKLIFWALRFHG 142

Query: 145 RLLFREIGLDISRIWQLTENSIVVRWELWGTPRVPWESYGCFSGTSRYKVDRNGKIYEHK 204
           ++LFR+I L+I R+WQ +EN I++RW L G PRVPWE+ G F GTSRYK+DRNGKIYEHK
Sbjct: 143 KILFRDISLEIFRVWQPSENMILIRWNLKGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHK 202

Query: 205 VDNLALDFPRPAAKVGSIADIVVASCPPSPNLTFWDMVGSTGD-GCSWANLYQAVVETVE 263
           VDNLA +FP       S+ D+V A CP SPN TF  M G+      SW   Y+AV  T++
Sbjct: 203 VDNLAFNFPHQLKPATSVLDMVTA-CPASPNPTF--MFGAMDSYSSSWIEFYKAVQRTLD 259

Query: 264 RE 265
           ++
Sbjct: 260 KQ 261



>AT2G46220.1 | chr2:18979655-18980557 FORWARD LENGTH=242
          Length = 241

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 121/157 (77%), Gaps = 2/157 (1%)

Query: 86  YYLNLGTAVRTLRDDLPAVFVREPNYDIYREDITFVDPLNTFHGIDNYKTIFWALRFHGR 145
           YY+N+G AVR++R++ P +F +E N+DIYR+DI F DP+NTF GIDNYK+IF ALRFHGR
Sbjct: 84  YYVNMGHAVRSIREEFPLLFYKELNFDIYRDDIVFKDPMNTFMGIDNYKSIFGALRFHGR 143

Query: 146 LLFREIGLDISRIWQLTENSIVVRWELWGTPRVPWESYGCFSGTSRYKVDRNGKIYEHKV 205
           + FR + +DI  +WQ TEN++++RW + G PR PWE+ G F GTS YK D+NGKIYEHKV
Sbjct: 144 IFFRALCVDIVSVWQPTENTLMIRWTVHGIPRGPWETRGRFDGTSEYKFDKNGKIYEHKV 203

Query: 206 DNLALDFPRPAAKVGSIADIVVA-SCPPSPNLTFWDM 241
           DN+A++ P P  ++ ++ ++V A SCP +P  T+++ 
Sbjct: 204 DNIAINSP-PKFQMLTVQELVEAISCPSTPKPTYFEF 239



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,445,104
Number of extensions: 223198
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)