BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0208900 Os05g0208900|AK111244
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0208900  Conserved hypothetical protein                      159   9e-40
Os01g0220000  Conserved hypothetical protein                       83   1e-16

>Os05g0208900 Conserved hypothetical protein
          Length = 191

 Score =  159 bits (403), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 96/191 (50%), Positives = 96/191 (50%)

Query: 1   TQLRTTNFLFHPQQRRRQPCDGDDPATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           TQLRTTNFLFHPQQRRRQPCDGDDPATTAT                              
Sbjct: 1   TQLRTTNFLFHPQQRRRQPCDGDDPATTATMADSGGSRSAASSSLRAPSMPPPLLCLPSS 60

Query: 61  XXXXVVEVAMTSSTPDLASSSTXXXXXXXXXXXXXXXXXDAAWEEGRHRXXXXXXXXXXX 120
               VVEVAMTSSTPDLASSST                 DAAWEEGRHR           
Sbjct: 61  PLPCVVEVAMTSSTPDLASSSTGRRPRCGHRRRCHLLLLDAAWEEGRHRAPLGGAAVLSV 120

Query: 121 XXXXXXXXELLLPRGGRVDDEELEVDASXXXXXXXXXXXXXXXWPGMTXXXXXXXXXXHG 180
                   ELLLPRGGRVDDEELEVDAS               WPGMT          HG
Sbjct: 121 GVGDGDGPELLLPRGGRVDDEELEVDASGGDGKRRGRDGGLRRWPGMTRRRRSSSARRHG 180

Query: 181 GWACRARPPRM 191
           GWACRARPPRM
Sbjct: 181 GWACRARPPRM 191



>Os01g0220000 Conserved hypothetical protein
          Length = 148

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 52/104 (50%)

Query: 65  VVEVAMTSSTPDLASSSTXXXXXXXXXXXXXXXXXDAAWEEGRHRXXXXXXXXXXXXXXX 124
           VVEVAMTSSTPDLASSST                 DAAWEEGRHR               
Sbjct: 35  VVEVAMTSSTPDLASSSTGRRPRCGHRRRCHLLLLDAAWEEGRHRAPLGGAAVLGVGVGD 94

Query: 125 XXXXELLLPRGGRVDDEELEVDASXXXXXXXXXXXXXXXWPGMT 168
               ELLLP GGRVDDEELEVDAS               WPGMT
Sbjct: 95  GAGPELLLPCGGRVDDEELEVDASGGDGKRRGRDGGLRRWPGMT 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,987,605
Number of extensions: 72255
Number of successful extensions: 100
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)