BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0200700 Os05g0200700|AK110596
         (250 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0200700  Conserved hypothetical protein                      343   6e-95
Os01g0198500  Conserved hypothetical protein                      129   3e-30
Os06g0554600  Conserved hypothetical protein                       74   1e-13

>Os05g0200700 Conserved hypothetical protein
          Length = 250

 Score =  343 bits (880), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 180/250 (72%), Positives = 180/250 (72%)

Query: 1   MDLATTPARRPMEAGMARRLWHVVLAVCHMLRRGLCRKRLMVDLHVXXXXXXXXXXXXXX 60
           MDLATTPARRPMEAGMARRLWHVVLAVCHMLRRGLCRKRLMVDLHV              
Sbjct: 1   MDLATTPARRPMEAGMARRLWHVVLAVCHMLRRGLCRKRLMVDLHVLLGRGKLAGKALRG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXFYGRRPREVEFSCTTTPSSYPHYGLFPFKSXXXX 120
                                     FYGRRPREVEFSCTTTPSSYPHYGLFPFKS    
Sbjct: 61  LLAHHAAAGHGHHLAASSSSSAALASFYGRRPREVEFSCTTTPSSYPHYGLFPFKSRGGG 120

Query: 121 XXXXXXXXXXXXXXLDAAAVARAFEMMSAEVEGTPSSSAAAVQXXXXXXWATATPSPMVA 180
                         LDAAAVARAFEMMSAEVEGTPSSSAAAVQ      WATATPSPMVA
Sbjct: 121 GGRRGGGGGGEYGGLDAAAVARAFEMMSAEVEGTPSSSAAAVQGGGGGGWATATPSPMVA 180

Query: 181 WILGRSPAGVRPLRVTDSPFPAVPENXXXXXXEQRVDDAEFEDFINKFYEQLRMQPSAAT 240
           WILGRSPAGVRPLRVTDSPFPAVPEN      EQRVDDAEFEDFINKFYEQLRMQPSAAT
Sbjct: 181 WILGRSPAGVRPLRVTDSPFPAVPENGGGGGGEQRVDDAEFEDFINKFYEQLRMQPSAAT 240

Query: 241 PDCQLRRRGR 250
           PDCQLRRRGR
Sbjct: 241 PDCQLRRRGR 250



>Os01g0198500 Conserved hypothetical protein
          Length = 237

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/246 (38%), Positives = 115/246 (46%), Gaps = 21/246 (8%)

Query: 12  MEAGMARRLWHVVLAVCHMLRRGLCRKRLMVDLHVXXXXXXXXXXXXXXXXXXXXXXXXX 71
           ME G  +RL HV+ AV HMLRRGLCRKRLM+DLH+                         
Sbjct: 1   MEPGFGKRLMHVLRAVYHMLRRGLCRKRLMMDLHLLLGRGKLAGRALRDVLLAHQPHGGA 60

Query: 72  XXXXXXXXXXXXXXX-----------FYGRRPREVEFSCTTTPSSYPHYGLFPFKSXXXX 120
                                     F+   PR+VEFSCTTTPS  P  G+FPF+     
Sbjct: 61  AAVAVMGGGAGVARGGDSSSSPLSASFFHHNPRDVEFSCTTTPSYAP--GVFPFRFRGRG 118

Query: 121 XXXXXXXXXXXXXXLDAAAVARAFEMMSAEVEGTPSSSAAAVQXXXXXXWATATPSPMVA 180
                         LDA+AVAR FEM++A+     +++A A           ATPSP++A
Sbjct: 119 GSRHAGGGASNYGGLDASAVARVFEMLNADA----AAAAGAGGETPLSSMPGATPSPLLA 174

Query: 181 WILGRSPAGVRPLRVTDSPFPAVPENXXXXXXEQRVDDAEFEDFINKFYEQLRMQPSAAT 240
             LGRSPAG R LRVTDSPFP  P        + RVDD +  DFI  F  QL  Q ++A 
Sbjct: 175 LSLGRSPAGTRQLRVTDSPFPVEPPE---GAVDGRVDD-KATDFIEWFRRQLLQQQASAA 230

Query: 241 PDCQLR 246
           P    R
Sbjct: 231 PTPDYR 236



>Os06g0554600 Conserved hypothetical protein
          Length = 266

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 74/166 (44%), Gaps = 30/166 (18%)

Query: 94  EVEFSCTTTPSSYPHYGLFPFKSXXXXXXXXXXXXXXXXX-----------XLDAAAVAR 142
           EVEFSC+ TPS    + L P K                               DAA +AR
Sbjct: 100 EVEFSCSNTPSYPSSFHLIPTKRRRRNNNGSNGRRRGGGGRGANGGEPGWYNYDAADIAR 159

Query: 143 AFEMMSAEVEGTPSSSAAAVQXXXXXXWATATPSPMVAW---ILGRSPAGVRPLRVTDSP 199
            FE++++  +      AA            ATPSP + W     GRSPA VR LR+TDSP
Sbjct: 160 VFEILNSSDQLLGDGGAAVA----------ATPSPAL-WRTSFGGRSPAPVRQLRITDSP 208

Query: 200 FPAVPENXXXXXXEQRVDDAEFEDFINKFYEQLRMQPSA---ATPD 242
           FP   +          + D E E+FINKFYEQLR Q  +   ATPD
Sbjct: 209 FPIRDDGGEDAGAG--LVDLEAEEFINKFYEQLRTQQQSLATATPD 252



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,801,549
Number of extensions: 226729
Number of successful extensions: 628
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)