BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0193100 Os05g0193100|Os05g0193100
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0193100  Cyclin-related domain containing protein            300   2e-82
Os05g0192500                                                      164   2e-41
Os05g0193000                                                      133   4e-32
Os05g0193700  Conserved hypothetical protein                      133   5e-32
Os05g0193350                                                       67   6e-12

>Os05g0193100 Cyclin-related domain containing protein
          Length = 146

 Score =  300 bits (768), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSPEEKDEYTMLLYECTRESYEDEA 60
           MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSPEEKDEYTMLLYECTRESYEDEA
Sbjct: 1   MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSPEEKDEYTMLLYECTRESYEDEA 60

Query: 61  KYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLGHWSDRHHPSHTDLDD 120
           KYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLGHWSDRHHPSHTDLDD
Sbjct: 61  KYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLGHWSDRHHPSHTDLDD 120

Query: 121 EDWKLVRSILERFDQRSAISRFNRRN 146
           EDWKLVRSILERFDQRSAISRFNRRN
Sbjct: 121 EDWKLVRSILERFDQRSAISRFNRRN 146



>Os05g0192500 
          Length = 133

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 106/135 (78%), Gaps = 5/135 (3%)

Query: 1   MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSPEE-KDEYTMLLYECTRESYEDE 59
           MWLLP+EEVD ILA+ NE +C  +RELKRANPSLVPSPEE KDE TMLLY C R +YED+
Sbjct: 1   MWLLPQEEVDRILAESNETVCTVYRELKRANPSLVPSPEEEKDESTMLLYTCARNAYEDD 60

Query: 60  AKYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLGHWSDRHHPSHTDLD 119
           AK+AKFQ WV  EYARKGFVEVDYDYF +R E   L +EAREEV+GHW    HPS +D D
Sbjct: 61  AKFAKFQAWVCDEYARKGFVEVDYDYFGERAEVFRLYDEAREEVMGHWD---HPSDSDDD 117

Query: 120 DEDWKL-VRSILERF 133
           DEDWKL +R+I   F
Sbjct: 118 DEDWKLFIRAIRRTF 132



>Os05g0193000 
          Length = 128

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 46  MLLYECTRESYEDEAKYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLG 105
           MLLY+ T +SYEDEAK+AK Q WV GEYARKGFVEVDYDYFA RE+AI LN+EA+ EVLG
Sbjct: 1   MLLYKWTHDSYEDEAKFAKLQAWVCGEYARKGFVEVDYDYFANREDAIRLNKEAQVEVLG 60

Query: 106 HWSDRHHPSHTDLDDEDWKL 125
           HWSD H+PSHTDLDDEDWKL
Sbjct: 61  HWSDHHYPSHTDLDDEDWKL 80



>Os05g0193700 Conserved hypothetical protein
          Length = 150

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 86/132 (65%), Gaps = 24/132 (18%)

Query: 1   MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSPEEKDEYTMLLYECTRESYEDEA 60
           MWLLP+EEVDWILAQ NEP+   FRELKRANPSL                      E+EA
Sbjct: 40  MWLLPQEEVDWILAQSNEPVPTEFRELKRANPSL----------------------EEEA 77

Query: 61  KYAKFQDWVRGEYARKGFVEVDYDYFAKREEAIWLNEEAREEVLGHWSDRHHPSHTDLDD 120
           K+AKFQ WVRGEYARKGFVEVDYDYF +R E   LN+EAREEV+GHW         D DD
Sbjct: 78  KFAKFQAWVRGEYARKGFVEVDYDYFGERAEVFRLNDEAREEVMGHWDHPSD--TDDDDD 135

Query: 121 EDWKLVRSILER 132
           EDWKL  S + R
Sbjct: 136 EDWKLFISAIRR 147



>Os05g0193350 
          Length = 79

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 1  MWLLPKEEVDWILAQCNEPICARFRELKRANPSLVPSP-EEKDEYTMLLYECTRESYEDE 59
          MWLLP+EEVDWILA+ NEP+   F ELKRA+PSLVP P EEKDE           SY  E
Sbjct: 1  MWLLPQEEVDWILAESNEPVSTEFHELKRASPSLVPLPEEEKDEGGGGGGVQAEASYNSE 60

Query: 60 AKYAK 64
             +K
Sbjct: 61 LCKSK 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,720,925
Number of extensions: 245908
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 5
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)